Literature DB >> 19517150

Elasticity transition and loop formation in vibrated bead chains: a simulation of polymer chains.

Y C Chou1, E Cho, T-h Chou, T M Hong.   

Abstract

By measuring the distribution function of the end-to-end distance, we find that strongly shaken bead chains exhibit many properties, such as the rigid-rod-to-Gaussian chain transition, scaling, fast drop of loop formation probability in the short-chain regime, and enhancement of loop formation probability for kinked chains, of long-chain polymers. Though there is difference in local details between our chains and the worm-like chains, our results are consistent with recent calculations based on the worm-like chain model in many respects.

Entities:  

Year:  2009        PMID: 19517150     DOI: 10.1140/epje/i2009-10463-1

Source DB:  PubMed          Journal:  Eur Phys J E Soft Matter        ISSN: 1292-8941            Impact factor:   1.890


  11 in total

1.  Radial Distribution Function of Semiflexible Polymers.

Authors: 
Journal:  Phys Rev Lett       Date:  1996-09-16       Impact factor: 9.161

2.  Scaling exponents and probability distributions of DNA end-to-end distance.

Authors:  Francesco Valle; Mélanie Favre; Paolo De Los Rios; Angelo Rosa; Giovanni Dietler
Journal:  Phys Rev Lett       Date:  2005-10-06       Impact factor: 9.161

3.  Cyclization of short DNA fragments and bending fluctuations of the double helix.

Authors:  Quan Du; Chaim Smith; Nahum Shiffeldrim; Maria Vologodskaia; Alexander Vologodskii
Journal:  Proc Natl Acad Sci U S A       Date:  2005-04-04       Impact factor: 11.205

4.  End-to-end distance vector distribution with fixed end orientations for the wormlike chain model.

Authors:  Andrew J Spakowitz; Zhen-Gang Wang
Journal:  Phys Rev E Stat Nonlin Soft Matter Phys       Date:  2005-10-07

5.  Confinement-driven translocation of a flexible polymer.

Authors:  Angelo Cacciuto; Erik Luijten
Journal:  Phys Rev Lett       Date:  2006-06-15       Impact factor: 9.161

6.  Experimental characterization of vibrated granular rings.

Authors:  Z A Daya; E Ben-Naim; R E Ecke
Journal:  Eur Phys J E Soft Matter       Date:  2006-10-10       Impact factor: 1.890

7.  Effects of sequence disorder on DNA looping and cyclization.

Authors:  Yuri O Popov; Alexei V Tkachenko
Journal:  Phys Rev E Stat Nonlin Soft Matter Phys       Date:  2007-08-01

8.  Effects of kink and flexible hinge defects on mechanical responses of short double-stranded DNA molecules.

Authors:  Hu Chen; Jie Yan
Journal:  Phys Rev E Stat Nonlin Soft Matter Phys       Date:  2008-04-15

9.  Semiflexible polymers: dependence on ensemble and boundary orientations.

Authors:  Debasish Chaudhuri
Journal:  Phys Rev E Stat Nonlin Soft Matter Phys       Date:  2007-02-28

10.  Triple minima in the free energy of semiflexible polymers.

Authors:  Abhishek Dhar; Debasish Chaudhuri
Journal:  Phys Rev Lett       Date:  2002-07-19       Impact factor: 9.161

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