Literature DB >> 16241768

Scaling exponents and probability distributions of DNA end-to-end distance.

Francesco Valle1, Mélanie Favre, Paolo De Los Rios, Angelo Rosa, Giovanni Dietler.   

Abstract

The scaling of the average gyration radius of polymers as a function of their length can be experimentally determined from ensemble measurements, such as light scattering, and agrees with analytical estimates. Ensemble techniques, yet, do not give access to the full probability distributions. Single molecule techniques, instead, can deliver information on both average quantities and distribution functions. Here we exploit the high resolution of atomic force microscopy over long DNA molecules adsorbed on a surface to measure the average end-to-end distance as a function of the DNA length, and its full distribution function. We find that all the scaling exponents are close to the predicted 3D values (upsilon=0.589+/-0.006 and delta=2.58+/-0.77). These results suggest that the adsorption process is akin to a geometric projection from 3D to 2D, known to preserve the scaling properties of fractal objects of dimension df<2.

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Year:  2005        PMID: 16241768     DOI: 10.1103/PhysRevLett.95.158105

Source DB:  PubMed          Journal:  Phys Rev Lett        ISSN: 0031-9007            Impact factor:   9.161


  20 in total

1.  Revisiting polymer statistical physics to account for the presence of long-range-correlated structural disorder in 2D DNA chains.

Authors:  J Moukhtar; C Vaillant; B Audit; A Arneodo
Journal:  Eur Phys J E Soft Matter       Date:  2011-11-16       Impact factor: 1.890

Review 2.  Capturing the essence of folding and functions of biomolecules using coarse-grained models.

Authors:  Changbong Hyeon; D Thirumalai
Journal:  Nat Commun       Date:  2011-09-27       Impact factor: 14.919

3.  Atomic force microscopy imaging of SWI/SNF action: mapping the nucleosome remodeling and sliding.

Authors:  Fabien Montel; Emeline Fontaine; Philippe St-Jean; Martin Castelnovo; Cendrine Faivre-Moskalenko
Journal:  Biophys J       Date:  2007-04-27       Impact factor: 4.033

4.  Individual bottle brush molecules in dense 2D layers restoring high degree of extension after collapse-decollapse cycle: directly measured scaling exponent.

Authors:  M O Gallyamov; B Tartsch; I I Potemkin; H G Börner; K Matyjaszewski; A R Khokhlov; M Möller
Journal:  Eur Phys J E Soft Matter       Date:  2009-05-06       Impact factor: 1.890

5.  Elasticity of DNA and the effect of dendrimer binding.

Authors:  Santosh Mogurampelly; Bidisha Nandy; Roland R Netz; Prabal K Maiti
Journal:  Eur Phys J E Soft Matter       Date:  2013-06-28       Impact factor: 1.890

6.  DNA deformations near charged surfaces: electron and atomic force microscopy views.

Authors:  F G A Faas; B Rieger; L J van Vliet; D I Cherny
Journal:  Biophys J       Date:  2009-08-19       Impact factor: 4.033

7.  The dynamics of individual nucleosomes controls the chromatin condensation pathway: direct atomic force microscopy visualization of variant chromatin.

Authors:  Fabien Montel; Hervé Menoni; Martin Castelnovo; Jan Bednar; Stefan Dimitrov; Dimitar Angelov; Cendrine Faivre-Moskalenko
Journal:  Biophys J       Date:  2009-07-22       Impact factor: 4.033

8.  Entropy-driven collective interactions in DNA brushes on a biochip.

Authors:  Dan Bracha; Eyal Karzbrun; Gabriel Shemer; Philip A Pincus; Roy H Bar-Ziv
Journal:  Proc Natl Acad Sci U S A       Date:  2013-03-05       Impact factor: 11.205

9.  Measurement of Mesoscale Conformational Dynamics of Freely Diffusing Molecules with Tracking FCS.

Authors:  Charles Limouse; Jason C Bell; Colin J Fuller; Aaron F Straight; Hideo Mabuchi
Journal:  Biophys J       Date:  2018-04-10       Impact factor: 4.033

10.  Elasticity transition and loop formation in vibrated bead chains: a simulation of polymer chains.

Authors:  Y C Chou; E Cho; T-h Chou; T M Hong
Journal:  Eur Phys J E Soft Matter       Date:  2009-06-11       Impact factor: 1.890

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