Literature DB >> 19513596

A review on molecular topology: applying graph theory to drug discovery and design.

José María Amigó1, Jorge Gálvez, Vincent M Villar.   

Abstract

Molecular topology is an application of graph theory and statistics in fields like chemistry, biology, and pharmacology, in which the molecular structure matters. Its scope is the topological characterization of molecules by means of numerical invariants, called topological indices, which are the main ingredients of the molecular topological models. These are statistical models that are instrumental in the discovery of new applications of naturally occurring molecules, as well as in the design of synthetic molecules with specific chemical, biological, or pharmacological properties. In this review, we focus on pharmacology, which is a novel field of application of molecular topology. Besides summarizing some recent developments, we also seek to bring closer this interesting biomedical application of mathematics to an interdisciplinary readership.

Mesh:

Year:  2009        PMID: 19513596     DOI: 10.1007/s00114-009-0536-7

Source DB:  PubMed          Journal:  Naturwissenschaften        ISSN: 0028-1042


  17 in total

1.  Search of a topological pattern to evaluate toxicity of heterogeneous compounds.

Authors:  R García-Domenech; J V de Julián-Ortiz; M J Duart; J M García-Torrecillas; G M Antón-Fos; I Ríos-Santamarina; C De Gregorio-Alapont; J Gálvez
Journal:  SAR QSAR Environ Res       Date:  2001       Impact factor: 3.000

2.  A fuzzy ARTMAP based on quantitative structure-property relationships (QSPRs) for predicting aqueous solubility of organic compounds.

Authors:  D Yaffe; Y Cohen; G Espinosa; A Arenas; F Giralt
Journal:  J Chem Inf Comput Sci       Date:  2001 Sep-Oct

3.  Molecular topology: a useful tool for the search of new antibacterials.

Authors:  C de Gregorio Alapont; R García-Domenech; J Gálvez; M J Ros; S Wolski; M D García
Journal:  Bioorg Med Chem Lett       Date:  2000-09-04       Impact factor: 2.823

4.  The problem of overfitting.

Authors:  Douglas M Hawkins
Journal:  J Chem Inf Comput Sci       Date:  2004 Jan-Feb

5.  Topological virtual screening: a way to find new anticonvulsant drugs from chemical diversity.

Authors:  L Bruno-Blanch; J Gálvez; R García-Domenech
Journal:  Bioorg Med Chem Lett       Date:  2003-08-18       Impact factor: 2.823

6.  Structural determination of paraffin boiling points.

Authors:  H WIENER
Journal:  J Am Chem Soc       Date:  1947-01       Impact factor: 15.419

7.  Application of a mathematical topological pattern of antihistaminic activity for the selection of new drug candidates and pharmacology assays.

Authors:  María J Duart; Ramón García-Domenech; Jorge Galvez; Pedro A Aleman; Rafael V Martín-Algarra; Gerardo M Antón-Fos
Journal:  J Med Chem       Date:  2006-06-15       Impact factor: 7.446

8.  Topological approach to analgesia.

Authors:  J Gálvez; R Garcia-Domenech; V De Julián-Ortiz; R Soler
Journal:  J Chem Inf Comput Sci       Date:  1994 Sep-Oct

9.  A novel quinoline, MT477: suppresses cell signaling through Ras molecular pathway, inhibits PKC activity, and demonstrates in vivo anti-tumor activity against human carcinoma cell lines.

Authors:  Piotr Jasinski; Brandon Welsh; Jorge Galvez; David Land; Pawel Zwolak; Lori Ghandi; Kaoru Terai; Arkadiusz Z Dudek
Journal:  Invest New Drugs       Date:  2007-10-24       Impact factor: 3.850

10.  New active drugs against liver stages of Plasmodium predicted by molecular topology.

Authors:  Nassira Mahmoudi; Ramon Garcia-Domenech; Jorge Galvez; Khemais Farhati; Jean-François Franetich; Robert Sauerwein; Laurent Hannoun; Francis Derouin; Martin Danis; Dominique Mazier
Journal:  Antimicrob Agents Chemother       Date:  2008-01-22       Impact factor: 5.191

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  6 in total

1.  Design of a high fragment efficiency library by molecular graph theory.

Authors:  Jennifer Venhorst; Sara Núñez; Chris G Kruse
Journal:  ACS Med Chem Lett       Date:  2010-09-03       Impact factor: 4.345

2.  Topological virtual screening: a way to find new compounds active in ulcerative colitis by inhibiting NF-κB.

Authors:  María Gálvez-Llompart; María C Recio; Ramón García-Domenech
Journal:  Mol Divers       Date:  2011-06-30       Impact factor: 2.943

3.  Novel potential agents for ulcerative colitis by molecular topology: suppression of IL-6 production in Caco-2 and RAW 264.7 cell lines.

Authors:  María Galvez-Llompart; María Del Carmen Recio Iglesias; Jorge Gálvez; Ramón García-Domenech
Journal:  Mol Divers       Date:  2013-06-23       Impact factor: 2.943

4.  Fuzzy RNA recognition by the Trypanosoma brucei editosome.

Authors:  Wolf-Matthias Leeder; Felix Klaus Geyer; Hans Ulrich Göringer
Journal:  Nucleic Acids Res       Date:  2022-06-10       Impact factor: 19.160

5.  Graph Theoretical Analysis of Structural Covariance Reveals the Relevance of Visuospatial and Attentional Areas in Essential Tremor Recovery After Stereotactic Radiosurgical Thalamotomy.

Authors:  Thomas A W Bolton; Dimitri Van De Ville; Jean Régis; Tatiana Witjas; Nadine Girard; Marc Levivier; Constantin Tuleasca
Journal:  Front Aging Neurosci       Date:  2022-05-23       Impact factor: 5.702

6.  COVID-19 and the Importance of Being Prepared: A Multidisciplinary Strategy for the Discovery of Antivirals to Combat Pandemics.

Authors:  Maria Galvez-Llompart; Riccardo Zanni; Jorge Galvez; Subhash C Basak; Sagar M Goyal
Journal:  Biomedicines       Date:  2022-06-07
  6 in total

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