Literature DB >> 11604019

A fuzzy ARTMAP based on quantitative structure-property relationships (QSPRs) for predicting aqueous solubility of organic compounds.

D Yaffe1, Y Cohen, G Espinosa, A Arenas, F Giralt.   

Abstract

Quantitative structure-property relationships (QSPRs) for estimating aqueous solubility of organic compounds at 25 degrees C were developed based on a fuzzy ARTMAP and a back-propagation neural networks using a heterogeneous set of 515 organic compounds. A set of molecular descriptors, developed from PM3 semiempirical MO-theory and topological descriptors (first-, second-, third-, and fourth-order molecular connectivity indices), were used as input parameters to the neural networks. Quantum chemical input descriptors included average polarizability, dipole moment, resonance energy, exchange energy, electron-nuclear attraction energy, and nuclear-nuclear (core-core) repulsion energy. The fuzzy ARTMAP/QSPR correlated aqueous solubility (S, mol/L) for a range of -11.62 to 4.31 logS with average absolute errors of 0.02 and 0.14 logS units for the overall and validation data sets, respectively. The optimal 11-13-1 back-propagation/QSPR model was less accurate, for the same solubility range, and exhibited larger average absolute errors of 0.29 and 0.28 logS units for the overall and validation sets, respectively. The fuzzy ARTMAP-based QSPR approach was shown to be superior to other back-propagation and multiple linear regression/QSPR models for aqueous solubility of organic compounds.

Year:  2001        PMID: 11604019     DOI: 10.1021/ci010323u

Source DB:  PubMed          Journal:  J Chem Inf Comput Sci        ISSN: 0095-2338


  5 in total

1.  Validation subset selections for extrapolation oriented QSPAR models.

Authors:  Csaba Szántai-Kis; István Kövesdi; György Kéri; László Orfi
Journal:  Mol Divers       Date:  2003       Impact factor: 2.943

2.  In silico prediction of aqueous solubility, human plasma protein binding and volume of distribution of compounds from calculated pKa and AlogP98 values.

Authors:  Mario Lobell; Vinothini Sivarajah
Journal:  Mol Divers       Date:  2003       Impact factor: 2.943

3.  Substructural fragments: an universal language to encode reactions, molecular and supramolecular structures.

Authors:  A Varnek; D Fourches; F Hoonakker; V P Solov'ev
Journal:  J Comput Aided Mol Des       Date:  2005-11-16       Impact factor: 3.686

4.  QSAR modeling: where have you been? Where are you going to?

Authors:  Artem Cherkasov; Eugene N Muratov; Denis Fourches; Alexandre Varnek; Igor I Baskin; Mark Cronin; John Dearden; Paola Gramatica; Yvonne C Martin; Roberto Todeschini; Viviana Consonni; Victor E Kuz'min; Richard Cramer; Romualdo Benigni; Chihae Yang; James Rathman; Lothar Terfloth; Johann Gasteiger; Ann Richard; Alexander Tropsha
Journal:  J Med Chem       Date:  2014-01-06       Impact factor: 7.446

Review 5.  A review on molecular topology: applying graph theory to drug discovery and design.

Authors:  José María Amigó; Jorge Gálvez; Vincent M Villar
Journal:  Naturwissenschaften       Date:  2009-06-10
  5 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.