Literature DB >> 19513049

Reflect: augmented browsing for the life scientist.

Evangelos Pafilis, Seán I O'Donoghue, Lars J Jensen, Heiko Horn, Michael Kuhn, Nigel P Brown, Reinhard Schneider.   

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Year:  2009        PMID： 19513049     DOI： 10.1038/nbt0609-508

Source DB:  PubMed          Journal:  Nat Biotechnol        ISSN： 1087-0156            Impact factor:   54.908


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  11 in total

1.  PDBsum: summaries and analyses of PDB structures.

Authors:  R A Laskowski
Journal:  Nucleic Acids Res       Date:  2001-01-01       Impact factor: 16.971

2.  A gene network for navigating the literature.

Authors:  Robert Hoffmann; Alfonso Valencia
Journal:  Nat Genet       Date:  2004-07       Impact factor: 38.330

3.  Ontology driven dynamic linking of biology resources.

Authors:  S K Bechhofer; R D Stevens; P W Lord
Journal:  Pac Symp Biocomput       Date:  2005

Review 4.  Linking entries in protein interaction database to structured text: the FEBS Letters experiment.

Authors:  Arnaud Ceol; Andrew Chatr-Aryamontri; Luana Licata; Gianni Cesareni
Journal:  FEBS Lett       Date:  2008-03-06       Impact factor: 4.124

5.  Overview of BioCreAtIvE task 1B: normalized gene lists.

Authors:  Lynette Hirschman; Marc Colosimo; Alexander Morgan; Alexander Yeh
Journal:  BMC Bioinformatics       Date:  2005-05-24       Impact factor: 3.169

6.  Database resources of the National Center for Biotechnology Information.

Authors:  David L Wheeler; Tanya Barrett; Dennis A Benson; Stephen H Bryant; Kathi Canese; Vyacheslav Chetvernin; Deanna M Church; Michael Dicuccio; Ron Edgar; Scott Federhen; Michael Feolo; Lewis Y Geer; Wolfgang Helmberg; Yuri Kapustin; Oleg Khovayko; David Landsman; David J Lipman; Thomas L Madden; Donna R Maglott; Vadim Miller; James Ostell; Kim D Pruitt; Gregory D Schuler; Martin Shumway; Edwin Sequeira; Steven T Sherry; Karl Sirotkin; Alexandre Souvorov; Grigory Starchenko; Roman L Tatusov; Tatiana A Tatusova; Lukas Wagner; Eugene Yaschenko
Journal:  Nucleic Acids Res       Date:  2007-11-27       Impact factor: 16.971

7.  Userscripts for the life sciences.

Authors:  Egon L Willighagen; Noel M O'Boyle; Harini Gopalakrishnan; Dazhi Jiao; Rajarshi Guha; Christoph Steinbeck; David J Wild
Journal:  BMC Bioinformatics       Date:  2007-12-21       Impact factor: 3.169

8.  STITCH: interaction networks of chemicals and proteins.

Authors:  Michael Kuhn; Christian von Mering; Monica Campillos; Lars Juhl Jensen; Peer Bork
Journal:  Nucleic Acids Res       Date:  2007-12-15       Impact factor: 16.971

Review 9.  Linking genes to literature: text mining, information extraction, and retrieval applications for biology.

Authors:  Martin Krallinger; Alfonso Valencia; Lynette Hirschman
Journal:  Genome Biol       Date:  2008-09-01       Impact factor: 13.583

10.  Overview of BioCreative II gene mention recognition.

Authors:  Larry Smith; Lorraine K Tanabe; Rie Johnson nee Ando; Cheng-Ju Kuo; I-Fang Chung; Chun-Nan Hsu; Yu-Shi Lin; Roman Klinger; Christoph M Friedrich; Kuzman Ganchev; Manabu Torii; Hongfang Liu; Barry Haddow; Craig A Struble; Richard J Povinelli; Andreas Vlachos; William A Baumgartner; Lawrence Hunter; Bob Carpenter; Richard Tzong-Han Tsai; Hong-Jie Dai; Feng Liu; Yifei Chen; Chengjie Sun; Sophia Katrenko; Pieter Adriaans; Christian Blaschke; Rafael Torres; Mariana Neves; Preslav Nakov; Anna Divoli; Manuel Maña-López; Jacinto Mata; W John Wilbur
Journal:  Genome Biol       Date:  2008-09-01       Impact factor: 13.583
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  38 in total

1.  For I dipped into the future.

Authors:  Andrea Rinaldi
Journal:  EMBO Rep       Date:  2010-05       Impact factor: 8.807

2.  Beyond accuracy: creating interoperable and scalable text-mining web services.

Authors:  Chih-Hsuan Wei; Robert Leaman; Zhiyong Lu
Journal:  Bioinformatics       Date:  2016-02-16       Impact factor: 6.937

3.  Semantic text mining support for lignocellulose research.

Authors:  Marie-Jean Meurs; Caitlin Murphy; Ingo Morgenstern; Greg Butler; Justin Powlowski; Adrian Tsang; René Witte
Journal:  BMC Med Inform Decis Mak       Date:  2012-04-30       Impact factor: 2.796

4.  Semi-automatic semantic annotation of PubMed queries: a study on quality, efficiency, satisfaction.

Authors:  Aurélie Névéol; Rezarta Islamaj Doğan; Zhiyong Lu
Journal:  J Biomed Inform       Date:  2010-11-20       Impact factor: 6.317

5.  The Lexicon Builder Web service: Building Custom Lexicons from two hundred Biomedical Ontologies.

Authors:  Gautam K Parai; Clement Jonquet; Rong Xu; Mark A Musen; Nigam H Shah
Journal:  AMIA Annu Symp Proc       Date:  2010-11-13

Review 6.  Text-mining solutions for biomedical research: enabling integrative biology.

Authors:  Dietrich Rebholz-Schuhmann; Anika Oellrich; Robert Hoehndorf
Journal:  Nat Rev Genet       Date:  2012-11-14       Impact factor: 53.242

7.  Integrating text mining into the MGI biocuration workflow.

Authors:  K G Dowell; M S McAndrews-Hill; D P Hill; H J Drabkin; J A Blake
Journal:  Database (Oxford)       Date:  2009-11-21       Impact factor: 3.451

8.  A side effect resource to capture phenotypic effects of drugs.

Authors:  Michael Kuhn; Monica Campillos; Ivica Letunic; Lars Juhl Jensen; Peer Bork
Journal:  Mol Syst Biol       Date:  2010-01-19       Impact factor: 11.429

9.  Cyclebase.org: version 2.0, an updated comprehensive, multi-species repository of cell cycle experiments and derived analysis results.

Authors:  Nicholas Paul Gauthier; Lars Juhl Jensen; Rasmus Wernersson; Søren Brunak; Thomas S Jensen
Journal:  Nucleic Acids Res       Date:  2009-11-24       Impact factor: 16.971

Review 10.  Calling International Rescue: knowledge lost in literature and data landslide!

Authors:  Teresa K Attwood; Douglas B Kell; Philip McDermott; James Marsh; Steve R Pettifer; David Thorne
Journal:  Biochem J       Date:  2009-12-10       Impact factor: 3.857
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