Literature DB >> 19502776

The evolving role of mass spectrometry in cancer biomarker discovery.

Pei Wang1, Jeffrey R Whiteaker, Amanda G Paulovich.   

Abstract

Although the field of mass spectrometry-based proteomics is still in its infancy, recent developments in targeted proteomic techniques have left the field poised to impact the clinical protein biomarker pipeline now more than at any other time in history. for proteomics to meet its potential for finding biomarkers, clinicians, statisticians, epidemiologists and chemists must work together in an interdisciplinary approach. These interdisciplinary efforts will have the greatest chance for success if participants from each discipline have a basic working knowledge of the other disciplines. To that end, the purpose of this review is to provide a nontechnical overview of the emerging/evolving roles that mass spectrometry (especially targeted modes of mass spectrometry) can play in the biomarker pipeline, in hope of making the technology more accessible to the broader community for biomarker discovery efforts. Additionally, the technologies discussed are broadly applicable to proteomic studies, and are not restricted to biomarker discovery.

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Year:  2009        PMID: 19502776      PMCID: PMC2957893          DOI: 10.4161/cbt.8.12.8634

Source DB:  PubMed          Journal:  Cancer Biol Ther        ISSN: 1538-4047            Impact factor:   4.742


  72 in total

1.  Global functional profiling of gene expression.

Authors:  Sorin Draghici; Purvesh Khatri; Rui P Martins; G Charles Ostermeier; Stephen A Krawetz
Journal:  Genomics       Date:  2003-02       Impact factor: 5.736

2.  Point: Proteomic patterns in biological fluids: do they represent the future of cancer diagnostics?

Authors:  Eleftherios P Diamandis
Journal:  Clin Chem       Date:  2003-08       Impact factor: 8.327

Review 3.  Protein biomarker discovery and validation: the long and uncertain path to clinical utility.

Authors:  Nader Rifai; Michael A Gillette; Steven A Carr
Journal:  Nat Biotechnol       Date:  2006-08       Impact factor: 54.908

4.  Systematic identification of human mitochondrial disease genes through integrative genomics.

Authors:  Sarah Calvo; Mohit Jain; Xiaohui Xie; Sunil A Sheth; Betty Chang; Olga A Goldberger; Antonella Spinazzola; Massimo Zeviani; Steven A Carr; Vamsi K Mootha
Journal:  Nat Genet       Date:  2006-04-02       Impact factor: 38.330

5.  Online immunoaffinity liquid chromatography/tandem mass spectrometry determination of a type II collagen peptide biomarker in rat urine: Investigation of the impact of collision-induced dissociation fluctuation on peptide quantitation.

Authors:  Michael Berna; Chris Schmalz; Kevin Duffin; Peter Mitchell; Mark Chambers; Brad Ackermann
Journal:  Anal Biochem       Date:  2006-06-09       Impact factor: 3.365

Review 6.  A human proteome detection and quantitation project.

Authors:  N Leigh Anderson; Norman G Anderson; Terry W Pearson; Christoph H Borchers; Amanda G Paulovich; Scott D Patterson; Michael Gillette; Ruedi Aebersold; Steven A Carr
Journal:  Mol Cell Proteomics       Date:  2009-01-07       Impact factor: 5.911

7.  Interference by human anti-mouse antibody in two-site immunoassays.

Authors:  L J Kricka; D Schmerfeld-Pruss; M Senior; D B Goodman; P Kaladas
Journal:  Clin Chem       Date:  1990-06       Impact factor: 8.327

8.  Gene set enrichment analysis: a knowledge-based approach for interpreting genome-wide expression profiles.

Authors:  Aravind Subramanian; Pablo Tamayo; Vamsi K Mootha; Sayan Mukherjee; Benjamin L Ebert; Michael A Gillette; Amanda Paulovich; Scott L Pomeroy; Todd R Golub; Eric S Lander; Jill P Mesirov
Journal:  Proc Natl Acad Sci U S A       Date:  2005-09-30       Impact factor: 11.205

9.  Global survey of phosphotyrosine signaling identifies oncogenic kinases in lung cancer.

Authors:  Klarisa Rikova; Ailan Guo; Qingfu Zeng; Anthony Possemato; Jian Yu; Herbert Haack; Julie Nardone; Kimberly Lee; Cynthia Reeves; Yu Li; Yerong Hu; Zhiping Tan; Matthew Stokes; Laura Sullivan; Jeffrey Mitchell; Randy Wetzel; Joan Macneill; Jian Min Ren; Jin Yuan; Corey E Bakalarski; Judit Villen; Jon M Kornhauser; Bradley Smith; Daiqiang Li; Xinmin Zhou; Steven P Gygi; Ting-Lei Gu; Roberto D Polakiewicz; John Rush; Michael J Comb
Journal:  Cell       Date:  2007-12-14       Impact factor: 41.582

10.  Glycomic approach for potential biomarkers on prostate cancer: profiling of N-linked glycans in human sera and pRNS cell lines.

Authors:  Maria Lorna A de Leoz; Hyun Joo An; Scott Kronewitter; Jaehan Kim; Sean Beecroft; Ruth Vinall; Suzanne Miyamoto; Ralph de Vere White; Kit S Lam; Carlito Lebrilla
Journal:  Dis Markers       Date:  2008       Impact factor: 3.434

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  28 in total

Review 1.  Selected reaction monitoring-based proteomics: workflows, potential, pitfalls and future directions.

Authors:  Paola Picotti; Ruedi Aebersold
Journal:  Nat Methods       Date:  2012-05-30       Impact factor: 28.547

Review 2.  Urinary biomarkers for renal tract malformations.

Authors:  Pedro Magalhães; Joost P Schanstra; Emma Carrick; Harald Mischak; Petra Zürbig
Journal:  Expert Rev Proteomics       Date:  2016-11-15       Impact factor: 3.940

Review 3.  Mass spectrometry based biomarker discovery, verification, and validation--quality assurance and control of protein biomarker assays.

Authors:  Carol E Parker; Christoph H Borchers
Journal:  Mol Oncol       Date:  2014-03-20       Impact factor: 6.603

4.  Targeted proteomics: a bridge between discovery and validation.

Authors:  Robert Harlan; Hui Zhang
Journal:  Expert Rev Proteomics       Date:  2014-10-28       Impact factor: 3.940

5.  Discovery of serum protein biomarkers in rheumatoid arthritis using MALDI-TOF-MS combined with magnetic beads.

Authors:  Xiaoxue Zhang; Zhaolin Yuan; Bo Shen; Min Zhu; Chibo Liu; Wei Xu
Journal:  Clin Exp Med       Date:  2011-09-16       Impact factor: 3.984

6.  The proteome of normal pancreatic juice.

Authors:  Courtney J Doyle; Kyle Yancey; Henry A Pitt; Mu Wang; Kerry Bemis; Michele T Yip-Schneider; Stuart T Sherman; Keith D Lillemoe; Michael D Goggins; C Max Schmidt
Journal:  Pancreas       Date:  2012-03       Impact factor: 3.327

Review 7.  Reconstructing the pipeline by introducing multiplexed multiple reaction monitoring mass spectrometry for cancer biomarker verification: an NCI-CPTC initiative perspective.

Authors:  Henry Rodriguez; Robert Rivers; Christopher Kinsinger; Mehdi Mesri; Tara Hiltke; Amir Rahbar; Emily Boja
Journal:  Proteomics Clin Appl       Date:  2010-11-22       Impact factor: 3.494

Review 8.  Restructuring proteomics through verification.

Authors:  Emily Boja; Robert Rivers; Christopher Kinsinger; Mehdi Mesri; Tara Hiltke; Amir Rahbar; Henry Rodriguez
Journal:  Biomark Med       Date:  2010-12       Impact factor: 2.851

Review 9.  Clinical potential of mass spectrometry-based proteogenomics.

Authors:  Bing Zhang; Jeffrey R Whiteaker; Andrew N Hoofnagle; Geoffrey S Baird; Karin D Rodland; Amanda G Paulovich
Journal:  Nat Rev Clin Oncol       Date:  2019-04       Impact factor: 66.675

10.  Serum amino acid profiles and their alterations in colorectal cancer.

Authors:  Alexander Benedikt Leichtle; Jean-Marc Nuoffer; Uta Ceglarek; Julia Kase; Tim Conrad; Helmut Witzigmann; Joachim Thiery; Georg Martin Fiedler
Journal:  Metabolomics       Date:  2011-09-16       Impact factor: 4.290

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