| Literature DB >> 19500345 |
Michael P Raynor1, Sally-Anne Stephenson, Kenneth B Pittman, David C A Walsh, Michael A Henderson, Alexander Dobrovic.
Abstract
INTRODUCTION: The ability to screen blood of early stage operable breast cancer patients for circulating tumour cells is of potential importance for identifying patients at risk of developing distant relapse. We present the results of a study of the efficacy of the immunobead RT-PCR method in identifying patients with circulating tumour cells.Entities:
Mesh:
Substances:
Year: 2009 PMID: 19500345 PMCID: PMC2712470 DOI: 10.1186/1756-8722-2-24
Source DB: PubMed Journal: J Hematol Oncol ISSN: 1756-8722 Impact factor: 17.388
RT-PCR primers and PCR conditions.
| Primer name | GenBank Accession Number | Sequence 5' – 3' | PCR annealing temperature | Size |
| CTCGGAGCTCCCACTCCTCAGA | ||||
| GCTCTTCTTGCCCTCGAGACAGT | 68°C | 188 bp | ||
| CCCCAGGGAAGAAGGAGAGCTG | ||||
| GCCCACGAGCTGGATGACTGTG | 68°C | 250 bp | ||
| TGTGAGGTGGTCCTTGGGAATTTGG | ||||
| TGCTGACTATGTCCCGCCACTGGA | 66°C | 339 bp | ||
| GGACCTGACAGTAAATGGGGAAC | ||||
| CTCTTCTTTCTGGAAATAACCAGCAC | 68°C | 186 bp | ||
| CGGATGAAACTCTGAGCAATGTTGAG | ||||
| CTGCAGTTCTGTGAGCCAAAGGTC | 68°C | 110 bp | ||
Sequences are shown for sense (s) and antisense (as) primers. The annealing temperatures used for the PCR reactions and the PCR product sizes are also shown.
Figure 1IB RT-PCR sensitivity test on dilutions of MDA-MB-453 in normal blood. Cells were added to 10 mls of normal blood. Lane 1, M = pUC19/HpaII marker. Lanes 2–4, no added cells. Lanes 5–7, 10 added cells. Lanes 8–10, 100 added cells, Lanes 11–13, 1000 added cells. Lane 14, C = cDNA positive control. Lane 15, R = RT negative control. Lanes 16–18, N = PCR negative controls. Product size is shown in base pairs (bp). A genomic DNA band is seen above the RT-PCR band for ELF3. The legend shows cells/10 ml of blood.
Clinical details and RT-PCR positivity data.
| 1 | - | x | x | ND | - | - | - | - | - | - | ||
| 2 | - | + | + | ND | - | - | - | - | - | - | ||
| 3 | - | - | - | ND | - | - | - | - | - | - | ||
| 4 | - | + | + | ND | - | - | - | - | - | - | ||
| 5 | - | x | x | ND | - | - | - | - | - | - | ||
| 6 | - | x | x | ND | - | - | - | + | - | - | ||
| 7 | Tis | - | x | x | ND | - | + | + | + | + | - | |
| 8 | x | + | + | 2 | - | - | - | - | - | - | ||
| 9 | I | T1 | - | + | + | 1 | - | - | - | - | - | - |
| 10 | I | T1 | - | + | - | 1 | - | - | - | - | - | - |
| 11 | I | T1 | - | + | + | 1 | - | - | - | - | - | - |
| 12 | I | T1 | - | + | + | 1 | - | - | - | - | - | - |
| 13 | I | T1 | - | + | + | 1 | - | - | - | - | - | - |
| 14 | I | T1 | - | + | + | 1 | - | - | - | - | - | - |
| 15 | I | T1 | - | + | + | 1 | - | - | - | - | - | |
| 16 | I | T1 | - | + | + | 1 | - | + | - | - | - | - |
| 17 | I | T1 | - | + | + | 1 | - | + | + | - | + | - |
| 18 | I | T1 | - | + | + | 2 | - | - | - | - | - | - |
| 19 | I | T1 | - | + | + | 2 | - | - | - | - | - | - |
| 20 | I | T1 | - | - | + | 2 | - | - | - | - | - | - |
| 21 | I | T1 | - | + | + | 2 | - | - | - | - | - | - |
| 22 | I | T1 | - | - | - | 3 | - | + | + | - | - | - |
| 23 | I | T1 | - | + | + | 3 | - | - | - | - | - | - |
| 24 | I | T1 | - | + | + | 3 | + | + | + | + | - | - |
| 25 | I | T1 | - | - | + | ND | - | - | - | - | - | - |
| 26 | IIa | T1 | + | + | - | 1 | - | + | + | + | + | + |
| 27 | IIa | T1 | + | + | + | 1 | - | - | - | - | - | - |
| 28 | IIa | T1 | + | + | + | 2 | - | + | + | + | + | + |
| 29 | IIa | T1 | + | + | + | 2 | - | + | + | + | + | + |
| 30 | IIa | T1 | + | + | + | 2 | + | + | + | + | + | + |
| 31 | IIa | T1 | + | x | x | 2 | + | - | - | - | - | - |
| 32 | IIa | T1 | + | + | + | 2 | - | - | - | - | - | - |
| 33 | IIa | T1 | + | - | + | 3 | - | + | + | + | + | - |
| 34 | IIa | T2 | - | x | x | 1 | - | - | - | - | - | - |
| 35 | IIa | T2 | - | + | + | 1 | - | - | - | - | - | - |
| 36 | IIa | T2 | - | + | + | 1 | - | - | - | - | - | - |
| 37 | IIa | T2 | - | + | + | 1 | - | - | - | - | - | - |
| 38 | IIa | T2 | - | + | + | 1 | + | + | + | + | - | - |
| 39 | IIa | T2 | - | + | + | 1 | + | + | + | + | + | - |
| 40 | IIa | T2 | - | + | + | 2 | - | - | - | - | - | - |
| 41 | IIa | T2 | - | + | + | 2 | - | - | - | - | - | - |
| 42 | IIa | T2 | - | + | + | 2 | + | - | - | - | - | - |
| 43 | IIa | T2 | - | + | + | 2 | - | - | - | - | - | - |
| 44 | IIa | T2 | - | + | + | 2 | + | - | - | - | - | - |
| 45 | IIa | T2 | - | - | - | 3 | - | - | - | - | - | - |
| 46 | IIa | T1 | - | + | + | 2 | - | - | - | - | - | - |
| 47 | IIb | T2 | + | + | + | 1 | - | + | + | + | + | - |
| 48 | IIb | T2 | + | x | x | 2 | + | + | + | + | + | + |
| 49 | IIb | T2 | + | + | + | 3 | + | + | + | + | + | + |
| 50 | IIb | T2 | + | + | + | 3 | - | + | + | + | + | + |
| 51 | IIb | T2 | + | + | - | 3 | + | + | + | + | + | - |
| 52 | IIb | T2 | + | - | - | 3 | + | - | - | - | - | - |
| 53 | IIb | T3 | - | - | - | 3 | + | + | + | + | + | - |
| 54 | IIb | T1 | x | - | - | 2 | + | + | + | + | + | + |
| 55 | IIb | T2 | x | - | - | 3 | + | + | + | + | + | - |
| 56 | IIIa | T3 | + | x | x | 2 | - | + | + | + | + | - |
Stage, tumour size (T), nodal status (N), estrogen receptor status (ER) and progesterone receptor status (PR), lymphovascular invasion (LVI), tumour grade, and positive or negative expression of the 5 RT-PCR markers are shown for the 56 breast cancer patients. ND denotes no data. x denotes unknown.
Figure 2IB RT-PCR analysis for a representative group of 10 breast cancer patients. Patient number corresponds to numbers provided in Table 2. Product sizes are shown in base pairs. M = pUC19/HpaII marker. A genomic DNA band is seen above RT-PCR band for ELF3.
Figure 3Disease free survival for 56 patients with early stage breast cancer. Comparing patients positive for RT-PCR markers (2 or more) with patients negative for RT-PCR markers (0 or 1).