Literature DB >> 19488708

Small-angle scattering and neutron contrast variation for studying bio-molecular complexes.

Andrew E Whitten1, Jill Trewhella.   

Abstract

Structural molecular biology over the past several decades has progressed from studies of the individual proteins, subunits, and domains that accomplish specific biochemistry to seeking to understand the dynamic bio-molecular complexes and assemblies that are responsible for biological function. This progress has led to an expansion of the structural analysis "tool box" to include methods that complement the mainstay techniques of the field: X-ray crystallography, nuclear magnetic resonance (NMR), and cryo-electron microscopy. Small-angle scattering of X-rays or neutrons is one such complementary technique that provides information on the size and shape of scattering particles in solution. This low-resolution structural information can be a powerful complement to high-resolution structural data, especially for the study of bio-molecular interactions with ligands or each other. Further, exploitation of the different neutron-scattering properties of the stable isotopes of hydrogen ((1)H and (2)H) can be used to enrich the information available from the small-angle scattering data, especially for bio-molecular complexes.

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Year:  2009        PMID: 19488708     DOI: 10.1007/978-1-59745-483-4_20

Source DB:  PubMed          Journal:  Methods Mol Biol        ISSN: 1064-3745


  14 in total

1.  Low-resolution solution structures of Munc18:Syntaxin protein complexes indicate an open binding mode driven by the Syntaxin N-peptide.

Authors:  Michelle P Christie; Andrew E Whitten; Gordon J King; Shu-Hong Hu; Russell J Jarrott; Kai-En Chen; Anthony P Duff; Philip Callow; Brett M Collins; David E James; Jennifer L Martin
Journal:  Proc Natl Acad Sci U S A       Date:  2012-06-05       Impact factor: 11.205

Review 2.  Emerging applications of small angle solution scattering in structural biology.

Authors:  Barnali N Chaudhuri
Journal:  Protein Sci       Date:  2015-02-12       Impact factor: 6.725

3.  Sample preparation methods to analyze DNA-induced structural changes in replication protein A.

Authors:  Chris A Brosey; Susan E Tsutakawa; Walter J Chazin
Journal:  Methods Mol Biol       Date:  2012

4.  A combined global and local approach to elucidate spatial organization of the Mycobacterial ParB-parS partition assembly.

Authors:  Barnali N Chaudhuri; Sayan Gupta; Volker S Urban; Mark R Chance; Rhijuta D'Mello; Lauren Smith; Kelly Lyons; Jessica Gee
Journal:  Biochemistry       Date:  2011-03-22       Impact factor: 3.162

5.  FoXS: a web server for rapid computation and fitting of SAXS profiles.

Authors:  Dina Schneidman-Duhovny; Michal Hammel; Andrej Sali
Journal:  Nucleic Acids Res       Date:  2010-05-27       Impact factor: 16.971

6.  All-atom ensemble modeling to analyze small-angle x-ray scattering of glycosylated proteins.

Authors:  Miklos Guttman; Patrick Weinkam; Andrej Sali; Kelly K Lee
Journal:  Structure       Date:  2013-03-05       Impact factor: 5.006

7.  Deuterium Labeling Together with Contrast Variation Small-Angle Neutron Scattering Suggests How Skp Captures and Releases Unfolded Outer Membrane Proteins.

Authors:  Nathan R Zaccai; Clifford W Sandlin; James T Hoopes; Joseph E Curtis; Patrick J Fleming; Karen G Fleming; Susan Krueger
Journal:  Methods Enzymol       Date:  2015-08-06       Impact factor: 1.600

8.  A new structural framework for integrating replication protein A into DNA processing machinery.

Authors:  Chris A Brosey; Chunli Yan; Susan E Tsutakawa; William T Heller; Robert P Rambo; John A Tainer; Ivaylo Ivanov; Walter J Chazin
Journal:  Nucleic Acids Res       Date:  2013-01-08       Impact factor: 16.971

9.  Neutrons describe ectoine effects on water H-bonding and hydration around a soluble protein and a cell membrane.

Authors:  Giuseppe Zaccai; Irina Bagyan; Jérôme Combet; Gabriel J Cuello; Bruno Demé; Yann Fichou; François-Xavier Gallat; Victor M Galvan Josa; Susanne von Gronau; Michael Haertlein; Anne Martel; Martine Moulin; Markus Neumann; Martin Weik; Dieter Oesterhelt
Journal:  Sci Rep       Date:  2016-08-16       Impact factor: 4.379

Review 10.  Progress in small-angle scattering from biological solutions at high-brilliance synchrotrons.

Authors:  Anne T Tuukkanen; Alessandro Spilotros; Dmitri I Svergun
Journal:  IUCrJ       Date:  2017-08-08       Impact factor: 4.769

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