Literature DB >> 19480952

A perspective: metatranscriptomics as a tool for the discovery of novel biocatalysts.

Falk Warnecke1, Matthias Hess.   

Abstract

In this mini-review, advantages and current bottlenecks of metatranscriptomic-sequencing for the discovery of novel enzymes for biotechnological applications will be discussed. Comparison of this innovative approach to traditional metagenomic-sequencing will illustrate that expression profiling has a promising future as a direct and very efficient method for the discovery of novel biocatalysts, even from complex microbial communities.

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Year:  2009        PMID： 19480952     DOI： 10.1016/j.jbiotec.2009.03.022

Source DB:  PubMed          Journal:  J Biotechnol        ISSN： 0168-1656            Impact factor:   3.307


  18 in total

1.  Metatranscriptomic analysis of microbes in an Oceanfront deep-subsurface hot spring reveals novel small RNAs and type-specific tRNA degradation.

Authors:  Shinnosuke Murakami; Kosuke Fujishima; Masaru Tomita; Akio Kanai
Journal:  Appl Environ Microbiol       Date:  2011-12-09       Impact factor: 4.792

2.  Metabolic fate of polyphenols in the human superorganism.

Authors:  John van Duynhoven; Elaine E Vaughan; Doris M Jacobs; Robèr A Kemperman; Ewoud J J van Velzen; Gabriele Gross; Laure C Roger; Sam Possemiers; Age K Smilde; Joël Doré; Johan A Westerhuis; Tom Van de Wiele
Journal:  Proc Natl Acad Sci U S A       Date:  2010-06-25       Impact factor: 11.205

3.  Considerations When Designing a Microbiome Study: Implications for Nursing Science.

Authors:  Katherine A Maki; Ana F Diallo; Mark B Lockwood; Alexis T Franks; Stefan J Green; Paule V Joseph
Journal:  Biol Res Nurs       Date:  2018-11-08       Impact factor: 2.522

Review 4.  Thermostable enzymes as biocatalysts in the biofuel industry.

Authors:  Carl J Yeoman; Yejun Han; Dylan Dodd; Charles M Schroeder; Roderick I Mackie; Isaac K O Cann
Journal:  Adv Appl Microbiol       Date:  2010-03-06       Impact factor: 5.086

5.  A multi-omic screening approach for the discovery of thermoactive glycoside hydrolases.

Authors:  Philip Busch; Marcel Suleiman; Christian Schäfers; Garabed Antranikian
Journal:  Extremophiles       Date:  2021-01-08       Impact factor: 2.395

Review 6.  Metatranscriptomics: an approach for retrieving novel eukaryotic genes from polluted and related environments.

Authors:  Arkadeep Mukherjee; M Sudhakara Reddy
Journal:  3 Biotech       Date:  2020-01-27       Impact factor: 2.406

7.  Comparative analysis of Lactobacillus plantarum WCFS1 transcriptomes by using DNA microarray and next-generation sequencing technologies.

Authors:  Milkha M Leimena; Michiel Wels; Roger S Bongers; Eddy J Smid; Erwin G Zoetendal; Michiel Kleerebezem
Journal:  Appl Environ Microbiol       Date:  2012-04-06       Impact factor: 4.792

8.  Detecting variants with Metabolic Design, a new software tool to design probes for explorative functional DNA microarray development.

Authors:  Sébastien Terrat; Eric Peyretaillade; Olivier Gonçalves; Eric Dugat-Bony; Fabrice Gravelat; Anne Moné; Corinne Biderre-Petit; Delphine Boucher; Julien Troquet; Pierre Peyret
Journal:  BMC Bioinformatics       Date:  2010-09-23       Impact factor: 3.169

9.  Metatranscriptomic analysis of small RNAs present in soybean deep sequencing libraries.

Authors:  Lorrayne Gomes Molina; Guilherme Cordenonsi da Fonseca; Guilherme Loss de Morais; Luiz Felipe Valter de Oliveira; Joseane Biso de Carvalho; Franceli Rodrigues Kulcheski; Rogerio Margis
Journal:  Genet Mol Biol       Date:  2012-06       Impact factor: 1.771

10.  RNA-seq-based metatranscriptomic and microscopic investigation reveals novel metalloproteases of Neobodo sp. as potential virulence factors for soft tunic syndrome in Halocynthia roretzi.

Authors:  Ho Bin Jang; Young Kyu Kim; Carmelo S Del Castillo; Seong Won Nho; In Seok Cha; Seong Bin Park; Mi Ae Ha; Jun-Ichi Hikima; Sung Jong Hong; Takashi Aoki; Tae Sung Jung
Journal:  PLoS One       Date:  2012-12-27       Impact factor: 3.240
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