Literature DB >> 19475151

A novel procedure for strain classification of fungal mycelium by cluster and artificial neural network analysis of Fourier transform infrared (FTIR) spectra.

Annette Naumann1.   

Abstract

Fourier transform infrared spectroscopy (FTIR) was used to discriminate important wood-destroying fungi. Mycelia of 26 fungal strains belonging to 24 different species were grown on agar plates and subjected to FTIR attenuated total reflection (ATR) measurements. To classify the FTIR spectra, cluster analysis--an unsupervised multivariate data analysis method--was compared with artificial neural network (ANN) analysis--a supervised approach. By internal validation, both methods classified 99% of the spectra correctly. External validation with independent test set spectra resulted in 95% correctly classified spectra, demonstrating the high potential of this method for fungal strain identification.

Mesh:

Year:  2009        PMID: 19475151     DOI: 10.1039/b821286d

Source DB:  PubMed          Journal:  Analyst        ISSN: 0003-2654            Impact factor:   4.616


  9 in total

1.  Root discrimination of closely related crop and weed species using FT MIR-ATR spectroscopy.

Authors:  Catharina Meinen; Rolf Rauber
Journal:  Front Plant Sci       Date:  2015-09-29       Impact factor: 5.753

2.  Oxalate secretion by ectomycorrhizal Paxillus involutus is mineral-specific and controls calcium weathering from minerals.

Authors:  A Schmalenberger; A L Duran; A W Bray; J Bridge; S Bonneville; L G Benning; M E Romero-Gonzalez; J R Leake; S A Banwart
Journal:  Sci Rep       Date:  2015-07-22       Impact factor: 4.379

3.  Ectomycorrhizal identification in environmental samples of tree roots by Fourier-transform infrared (FTIR) spectroscopy.

Authors:  Rodica Pena; Christa Lang; Annette Naumann; Andrea Polle
Journal:  Front Plant Sci       Date:  2014-05-27       Impact factor: 5.753

4.  Classification and identification of Rhodobryum roseum Limpr. and its adulterants based on fourier-transform infrared spectroscopy (FTIR) and chemometrics.

Authors:  Zhen Cao; Zhenjie Wang; Zhonglin Shang; Jiancheng Zhao
Journal:  PLoS One       Date:  2017-02-16       Impact factor: 3.240

5.  Root Differentiation of Agricultural Plant Cultivars and Proveniences Using FTIR Spectroscopy.

Authors:  Nicole Legner; Catharina Meinen; Rolf Rauber
Journal:  Front Plant Sci       Date:  2018-06-05       Impact factor: 5.753

6.  Optimized imaging methods for species-level identification of food-contaminating beetles.

Authors:  Tanmay Bera; Leihong Wu; Hongjian Ding; Howard Semey; Amy Barnes; Zhichao Liu; Himansu Vyas; Weida Tong; Joshua Xu
Journal:  Sci Rep       Date:  2021-04-12       Impact factor: 4.996

7.  Fourier transform infrared spectroscopy coupled with machine learning classification for identification of oxidative damage in freeze-dried heart valves.

Authors:  Dejia Liu; Sükrü Caliskan; Bita Rashidfarokhi; Harriëtte Oldenhof; Klaus Jung; Harald Sieme; Andres Hilfiker; Willem F Wolkers
Journal:  Sci Rep       Date:  2021-06-10       Impact factor: 4.379

8.  Detection of Vero Cells Infected with Herpes Simplex Types 1 and 2 and Varicella Zoster Viruses Using Raman Spectroscopy and Advanced Statistical Methods.

Authors:  Mahmoud Huleihel; Elad Shufan; Leila Zeiri; Ahmad Salman
Journal:  PLoS One       Date:  2016-04-14       Impact factor: 3.240

9.  Hydrophobin gene deletion and environmental growth conditions impact mechanical properties of mycelium by affecting the density of the material.

Authors:  Freek V W Appels; Jan Dijksterhuis; Catherine E Lukasiewicz; Kaspar M B Jansen; Han A B Wösten; Pauline Krijgsheld
Journal:  Sci Rep       Date:  2018-03-16       Impact factor: 4.379

  9 in total

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