Literature DB >> 19474452

Perioperative genomic profiles using structure-specific oligonucleotide probes.

Kirk J Hogan1, James K Burmester, Michael D Caldwell, Quinn H Hogan, Douglas B Coursin, Dawn N Green, Rebecca M R Selzer, Thomas P Broderick, Deborah A Rusy, Mark Poroli, Anna L Lutz, Allison M Sanders, Mary C Oldenburg, James A Koelbl, Monika de Arruda-Indig, Jennifer L Halsey, Stephen P Day, Michael J Domanico.   

Abstract

OBJECTIVES: Many complications in the perioperative interval are associated with genetic susceptibilities that may be unknown in advance of surgery and anesthesia, including drug toxicity and inefficacy, thrombosis, prolonged neuromuscular blockade, organ failure and sepsis. The aims of this study were to design and validate the first genetic testing platform and panel designed for use in perioperative care, to establish allele frequencies in a target population, and to determine the number of mutant alleles per patient undergoing surgery. DESIGN/SETTING/PARTICIPANTS AND METHODS: One hundred fifty patients at Marshfield Clinic, Marshfield, Wisconsin, 100 patients at the Medical College of Wisconsin Zablocki Veteran's Administration Medical Center, Milwaukee, Wisconsin, and 200 patients at the University of Wisconsin Hospitals and Clinics, Madison, Wisconsin undergoing surgery and anesthesia were tested for 48 polymorphisms in 22 genes including ABC, BChE, ACE, CYP2C9, CYP2C19, CYP2D6, CYP3A4, CYP3A5, beta2AR, TPMT, F2, F5, F7, MTHFR, TNFalpha, TNFbeta, CCR5, ApoE, HBB, MYH7, ABO and Gender (PRKY, PFKFB1). Using structure-specific cleavage of oligonucleotide probes (Invader, Third Wave Technologies, Inc., Madison, WI), 96-well plates were configured so that each well contained reagents for detection of both the wild type and mutant alleles at each locus.
RESULTS: There were 21,600 genotypes confirmed in duplicate. After withdrawal of polymorphisms in non-pathogenic genes (i.e., the ABO blood group and gender-specific alleles), 376 of 450 patients were found to be homozygous for mutant alleles at one or more loci. Modes of two mutant homozygous loci and 10 mutant alleles in aggregate (i.e., the sum of homozygous and heterozygous mutant polymorphisms) were observed per patient.
CONCLUSIONS: Significant genetic heterogeneity that may not be accounted for by taking a family medical history, or by obtaining routine laboratory test results, is present in most patients presenting for surgery and may be detected using a newly developed genotyping platform.

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Year:  2009        PMID: 19474452      PMCID: PMC2757430          DOI: 10.3121/cmr.2009.837

Source DB:  PubMed          Journal:  Clin Med Res        ISSN: 1539-4182


  80 in total

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3.  APOE-epsilon4 predisposes to cognitive dysfunction following uncomplicated carotid endarterectomy.

Authors:  E J Heyer; D A Wilson; D H Sahlein; J Mocco; S C Williams; R Sciacca; A Rampersad; R J Komotar; J Zurica; A Benvenisty; D O Quest; G Todd; R A Solomon; E S Connolly
Journal:  Neurology       Date:  2005-10-05       Impact factor: 9.910

4.  CYP2C19 genotype affects diazepam pharmacokinetics and emergence from general anesthesia.

Authors:  Shinichi Inomata; Atsushi Nagashima; Fumio Itagaki; Masato Homma; Masuhiro Nishimura; Yoshiko Osaka; Kazuhiko Okuyama; Einosuke Tanaka; Takako Nakamura; Yukinao Kohda; Shinsaku Naito; Masayuki Miyabe; Hidenori Toyooka
Journal:  Clin Pharmacol Ther       Date:  2005-12       Impact factor: 6.875

5.  Association of the ABCB1 3435C>T polymorphism with antiemetic efficacy of 5-hydroxytryptamine type 3 antagonists.

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Journal:  Clin Pharmacol Ther       Date:  2005-12       Impact factor: 6.875

Review 6.  The Invader assay for SNP genotyping.

Authors:  Michael Olivier
Journal:  Mutat Res       Date:  2005-06-03       Impact factor: 2.433

7.  A prospective, randomized pilot trial of model-based warfarin dose initiation using CYP2C9 genotype and clinical data.

Authors:  Michael A Hillman; Russell A Wilke; Steven H Yale; Humberto J Vidaillet; Michael D Caldwell; Ingrid Glurich; Richard L Berg; John Schmelzer; James K Burmester
Journal:  Clin Med Res       Date:  2005-08

8.  Inflammatory gene polymorphisms influence risk of postoperative morbidity after lung resection.

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9.  Genetic factors contribute to bleeding after cardiac surgery.

Authors:  I J Welsby; M V Podgoreanu; B Phillips-Bute; J P Mathew; P K Smith; M F Newman; D A Schwinn; M Stafford-Smith
Journal:  J Thromb Haemost       Date:  2005-05-09       Impact factor: 5.824

10.  Association of genetic polymorphisms with risk of renal injury after coronary bypass graft surgery.

Authors:  Mark Stafford-Smith; Mihai Podgoreanu; Madhav Swaminathan; Barbara Phillips-Bute; Joseph P Mathew; Elizabeth H Hauser; Michelle P Winn; Carmelo Milano; Dahlia M Nielsen; Mike Smith; Richard Morris; Mark F Newman; Debra A Schwinn
Journal:  Am J Kidney Dis       Date:  2005-03       Impact factor: 8.860

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