Literature DB >> 19474197

Does gene translocation accelerate the evolution of laterally transferred genes?

Weilong Hao1, G Brian Golding.   

Abstract

Lateral gene transfer (LGT) and gene rearrangement are essential for shaping bacterial genomes during evolution. Separate attention has been focused on understanding the process of lateral gene transfer and the process of gene translocation. However, little is known about how gene translocation affects laterally transferred genes. Here we have examined gene translocations and lateral gene transfers in closely related genome pairs. The results reveal that translocated genes undergo elevated rates of evolution and gene translocation tends to take place preferentially in recently acquired genes. Translocated genes have a high probability to be truncated, suggesting that translocation followed by truncation/deletion might play an important role in the fast turnover of laterally transferred genes. Furthermore, more recently acquired genes have a higher proportion of genes on the leading strand, suggesting a strong strand bias of lateral gene transfer.

Mesh:

Year:  2009        PMID: 19474197      PMCID: PMC2728873          DOI: 10.1534/genetics.109.104216

Source DB:  PubMed          Journal:  Genetics        ISSN: 0016-6731            Impact factor:   4.562


  70 in total

1.  Protein dispensability and rate of evolution.

Authors:  A E Hirsh; H B Fraser
Journal:  Nature       Date:  2001-06-28       Impact factor: 49.962

2.  Gene essentiality determines chromosome organisation in bacteria.

Authors:  Eduardo P C Rocha; Antoine Danchin
Journal:  Nucleic Acids Res       Date:  2003-11-15       Impact factor: 16.971

3.  Monitoring and modeling horizontal gene transfer.

Authors:  Kaare M Nielsen; Jeffrey P Townsend
Journal:  Nat Biotechnol       Date:  2004-09       Impact factor: 54.908

Review 4.  Insights on biology and evolution from microbial genome sequencing.

Authors:  Claire M Fraser-Liggett
Journal:  Genome Res       Date:  2005-12       Impact factor: 9.043

5.  Asymmetrical evolution of cytochrome bd subunits.

Authors:  Weilong Hao; G Brian Golding
Journal:  J Mol Evol       Date:  2006-02-10       Impact factor: 2.395

6.  Ongoing evolution of strand composition in bacterial genomes.

Authors:  E P Rocha; A Danchin
Journal:  Mol Biol Evol       Date:  2001-09       Impact factor: 16.240

7.  ISfinder: the reference centre for bacterial insertion sequences.

Authors:  P Siguier; J Perochon; L Lestrade; J Mahillon; M Chandler
Journal:  Nucleic Acids Res       Date:  2006-01-01       Impact factor: 16.971

Review 8.  Bacterial repetitive extragenic palindromic sequences are DNA targets for Insertion Sequence elements.

Authors:  Raquel Tobes; Eduardo Pareja
Journal:  BMC Genomics       Date:  2006-03-24       Impact factor: 3.969

9.  Algorithms for computing parsimonious evolutionary scenarios for genome evolution, the last universal common ancestor and dominance of horizontal gene transfer in the evolution of prokaryotes.

Authors:  Boris G Mirkin; Trevor I Fenner; Michael Y Galperin; Eugene V Koonin
Journal:  BMC Evol Biol       Date:  2003-01-06       Impact factor: 3.260

10.  Evolution of mosaic operons by horizontal gene transfer and gene displacement in situ.

Authors:  Marina V Omelchenko; Kira S Makarova; Yuri I Wolf; Igor B Rogozin; Eugene V Koonin
Journal:  Genome Biol       Date:  2003-08-29       Impact factor: 13.583

View more
  9 in total

1.  Inferring bacterial genome flux while considering truncated genes.

Authors:  Weilong Hao; G Brian Golding
Journal:  Genetics       Date:  2010-06-15       Impact factor: 4.562

Review 2.  Coevolution of the Organization and Structure of Prokaryotic Genomes.

Authors:  Marie Touchon; Eduardo P C Rocha
Journal:  Cold Spring Harb Perspect Biol       Date:  2016-01-04       Impact factor: 10.005

3.  Conjugative DNA transfer induces the bacterial SOS response and promotes antibiotic resistance development through integron activation.

Authors:  Zeynep Baharoglu; David Bikard; Didier Mazel
Journal:  PLoS Genet       Date:  2010-10-21       Impact factor: 5.917

4.  Homologous recombination drives both sequence diversity and gene content variation in Neisseria meningitidis.

Authors:  Ying Kong; Jennifer H Ma; Keisha Warren; Raymond S W Tsang; Donald E Low; Frances B Jamieson; David C Alexander; Weilong Hao
Journal:  Genome Biol Evol       Date:  2013       Impact factor: 3.416

5.  Putative interchromosomal rearrangements in the hexaploid wheat (Triticum aestivum L.) genotype 'Chinese Spring' revealed by gene locations on homoeologous chromosomes.

Authors:  Jian Ma; Jiri Stiller; Zhi Zheng; Yuming Wei; You-Liang Zheng; Guijun Yan; Jaroslav Doležel; Chunji Liu
Journal:  BMC Evol Biol       Date:  2015-03-11       Impact factor: 3.260

6.  Replication-Associated Mutational Pressure (RMP) Governs Strand-Biased Compositional Asymmetry (SCA) and Gene Organization in Animal Mitochondrial Genomes.

Authors:  Qiang Lin; Peng Cui; Feng Ding; Songnian Hu; Jun Yu
Journal:  Curr Genomics       Date:  2012-03       Impact factor: 2.236

7.  Sequence-based analysis of translocations and inversions in bread wheat (Triticum aestivum L.).

Authors:  Jian Ma; Jiri Stiller; Paul J Berkman; Yuming Wei; Jan Rogers; Catherine Feuillet; Jaroslav Dolezel; Klaus F Mayer; Kellye Eversole; You-Liang Zheng; Chunji Liu
Journal:  PLoS One       Date:  2013-11-15       Impact factor: 3.240

8.  Strand-biased gene distribution in bacteria is related to both horizontal gene transfer and strand-biased nucleotide composition.

Authors:  Hao Wu; Hongzhu Qu; Ning Wan; Zhang Zhang; Songnian Hu; Jun Yu
Journal:  Genomics Proteomics Bioinformatics       Date:  2012-08-08       Impact factor: 7.691

9.  Expansion of sweet taste receptor genes in grass carp (Ctenopharyngodon idellus) coincided with vegetarian adaptation.

Authors:  Xiao-Chen Yuan; Xu-Fang Liang; Wen-Jing Cai; Shan He; Wen-Jie Guo; Kang-Sen Mai
Journal:  BMC Evol Biol       Date:  2020-02-11       Impact factor: 3.260

  9 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.