Literature DB >> 19470643

Molecular recognition and self-assembly special feature: Squaring cooperative binding circles.

Alexander B C Deutman1, Cyrille Monnereau, Mohamed Moalin, Ruud G E Coumans, Nico Veling, Michiel Coenen, Jan M M Smits, René de Gelder, Johannes A A W Elemans, Gianfranco Ercolani, Roeland J M Nolte, Alan E Rowan.   

Abstract

The cooperative binding effects of viologens and pyridines to a synthetic bivalent porphyrin receptor are used as a model system to study how the magnitudes of these effects relate to the experimentally obtained values. The full thermodynamic and kinetic circles concerning both activation and inhibition of the cage of the receptor for the binding of viologens were measured and evaluated. The results strongly emphasize the apparent character of measured binding and rate constants, in which the fractional saturation of receptors with other guests is linearly expressed in these constants. The presented method can be used as a simple tool to better analyze and comprehend the experimentally observed kinetics and thermodynamics of natural and artificial cooperative systems.

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Year:  2009        PMID: 19470643      PMCID: PMC2705591          DOI: 10.1073/pnas.0810145106

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  15 in total

1.  Metal Ions as Allosteric Inhibitors in Hydrogen-Bonding Receptors This work was supported by a grant from the Natural Sciences and Engineering Research Council of Canada and by Research Corporation (Research Innovation Award).

Authors: 
Journal:  Angew Chem Int Ed Engl       Date:  2000-03       Impact factor: 15.336

2.  Highly negative homotropic allosteric binding of viologens in a double-cavity porphyrin.

Authors:  Pall Thordarson; Edward J A Bijsterveld; Johannes A A W Elemans; Peter Kasák; Roeland J M Nolte; Alan E Rowan
Journal:  J Am Chem Soc       Date:  2003-02-05       Impact factor: 15.419

3.  A dendritic porphyrin receptor for C(60) which features a profound positive allosteric effect.

Authors:  Masatsugu Ayabe; Atsushi Ikeda; Yohei Kubo; Masayuki Takeuchi; Seiji Shinkai
Journal:  Angew Chem Int Ed Engl       Date:  2002-08-02       Impact factor: 15.336

4.  Allosterically driven multicomponent assembly.

Authors:  Pall Thordarson; Ruud G E Coumans; Johannes A A W Elemans; Paul J Thomassen; Johan Visser; Alan E Rowan; Roeland J M Nolte
Journal:  Angew Chem Int Ed Engl       Date:  2004-09-13       Impact factor: 15.336

Review 5.  Understanding noncovalent interactions: ligand binding energy and catalytic efficiency from ligand-induced reductions in motion within receptors and enzymes.

Authors:  Dudley H Williams; Elaine Stephens; Dominic P O'Brien; Min Zhou
Journal:  Angew Chem Int Ed Engl       Date:  2004-12-10       Impact factor: 15.336

6.  Pseudo-allosteric recognition of mandelic acid with an enantioselective coordination complex.

Authors:  Jungseok Heo; Chad A Mirkin
Journal:  Angew Chem Int Ed Engl       Date:  2006-01-30       Impact factor: 15.336

Review 7.  Allosteric mechanisms of signal transduction.

Authors:  Jean-Pierre Changeux; Stuart J Edelstein
Journal:  Science       Date:  2005-06-03       Impact factor: 47.728

8.  Positive heterotropic cooperativity for selective guest binding via electronic communications through a fused zinc porphyrin array.

Authors:  Hiroshi Sato; Kentaro Tashiro; Hideyuki Shinmori; Atsuhiro Osuka; Yasujiro Murata; Koichi Komatsu; Takuzo Aida
Journal:  J Am Chem Soc       Date:  2005-09-28       Impact factor: 15.419

9.  Allosteric tuning of the intra-cavity binding properties of a calix[6]arene through external binding to a ZnII center coordinated to amino side chains.

Authors:  Ulrich Darbost; Olivier Sénèque; Yun Li; Gildas Bertho; Jérôme Marrot; Marie-Noëlle Rager; Olivia Reinaud; Ivan Jabin
Journal:  Chemistry       Date:  2007       Impact factor: 5.236

10.  Studies into the thermodynamic origin of negative cooperativity in ion-pairing molecular recognition.

Authors:  Suzanne L Tobey; Eric V Anslyn
Journal:  J Am Chem Soc       Date:  2003-09-10       Impact factor: 15.419

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  4 in total

1.  Molecular recognition and self-assembly special feature: Introduction to the molecular recognition and self-assembly special feature.

Authors:  Julius Rebek
Journal:  Proc Natl Acad Sci U S A       Date:  2009-06-30       Impact factor: 11.205

2.  Crystallographic observation of 'induced fit' in a cryptophane host-guest model system.

Authors:  Olena Taratula; P Aru Hill; Najat S Khan; Patrick J Carroll; Ivan J Dmochowski
Journal:  Nat Commun       Date:  2010-12-21       Impact factor: 14.919

3.  Cofactor Controlled Encapsulation of a Rhodium Hydroformylation Catalyst.

Authors:  Lukas J Jongkind; Johannes A A W Elemans; Joost N H Reek
Journal:  Angew Chem Int Ed Engl       Date:  2019-01-29       Impact factor: 15.336

4.  113Cd as a Probe in NMR Studies of Allosteric Host-Guest-Ligand Complexes of Porphyrin Cage Compounds.

Authors:  Jeroen P J Bruekers; Matthijs A Hellinghuizen; Anne Swartjes; Paul Tinnemans; Paul B White; Johannes A A W Elemans; Roeland J M Nolte
Journal:  European J Org Chem       Date:  2022-04-13
  4 in total

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