Literature DB >> 19468039

The human Major Histocompatibility Complex as a paradigm in genomics research.

Claire Vandiedonck1, Julian C Knight.   

Abstract

Since its discovery more than 50 years ago, the human Major Histocompatibility Complex (MHC) on chromosome 6p21.3 has been at the forefront of human genetic research. Here, we review from a historical perspective the major advances in our understanding of the nature and consequences of genetic variation which have involved the MHC, as well as highlighting likely future directions. As a consequence of its particular genomic structure, its remarkable polymorphism and its early implication in numerous diseases, the MHC has been considered as a model region for genomics, being the first substantial region to be sequenced and establishing fundamental concepts of linkage disequilibrium, haplotypic structure and meiotic recombination. Recently, the MHC became the first genomic region to be entirely re-sequenced for common haplotypes, while studies mapping gene expression phenotypes across the genome have strongly implicated variation in the MHC. This review shows how the MHC continues to provide new insights and remains in the vanguard of contemporary research in human genomics.

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Mesh:

Year:  2009        PMID: 19468039      PMCID: PMC2987720          DOI: 10.1093/bfgp/elp010

Source DB:  PubMed          Journal:  Brief Funct Genomic Proteomic        ISSN: 1473-9550


  172 in total

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9.  SNP-specific extraction of haplotype-resolved targeted genomic regions.

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10.  Absence of the TAP2 human recombination hotspot in chimpanzees.

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  45 in total

1.  Analytical methods for disease association studies with immunogenetic data.

Authors:  Jill A Hollenbach; Steven J Mack; Glenys Thomson; Pierre-Antoine Gourraud
Journal:  Methods Mol Biol       Date:  2012

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Authors:  Simone de Jong; Kristel R van Eijk; Dave W L H Zeegers; Eric Strengman; Esther Janson; Jan H Veldink; Leonard H van den Berg; Wiepke Cahn; René S Kahn; Marco P M Boks; Roel A Ophoff
Journal:  Eur J Hum Genet       Date:  2012-03-21       Impact factor: 4.246

Review 3.  Genomic architecture of MHC-linked odorant receptor gene repertoires among 16 vertebrate species.

Authors:  Pablo Sandro Carvalho Santos; Thomas Kellermann; Barbara Uchanska-Ziegler; Andreas Ziegler
Journal:  Immunogenetics       Date:  2010-08-03       Impact factor: 2.846

4.  Multiplicative fitness, rapid haplotype discovery, and fitness decay explain evolution of human MHC.

Authors:  Alexander E Lobkovsky; Lee Levi; Yuri I Wolf; Martin Maiers; Loren Gragert; Idan Alter; Yoram Louzoun; Eugene V Koonin
Journal:  Proc Natl Acad Sci U S A       Date:  2019-06-21       Impact factor: 11.205

5.  Meiotic recombinations within major histocompatibility complex of human embryos.

Authors:  Fulya Taylan; Ender Altiok
Journal:  Immunogenetics       Date:  2012-08-15       Impact factor: 2.846

Review 6.  The MHC class I genes of zebrafish.

Authors:  Hayley Dirscherl; Sean C McConnell; Jeffrey A Yoder; Jill L O de Jong
Journal:  Dev Comp Immunol       Date:  2014-03-11       Impact factor: 3.636

7.  Distribution of ancient α1 and α2 domain lineages between two classical MHC class I genes and their alleles in grass carp.

Authors:  Zibin Li; Nan Zhang; Lizhen Ma; Zehui Qu; Xiaohui Wei; Zixin Liu; Minghu Tang; Nianzhi Zhang; Yinan Jiang; Chun Xia
Journal:  Immunogenetics       Date:  2019-04-02       Impact factor: 2.846

8.  HLA-Arena: A Customizable Environment for the Structural Modeling and Analysis of Peptide-HLA Complexes for Cancer Immunotherapy.

Authors:  Dinler A Antunes; Jayvee R Abella; Sarah Hall-Swan; Didier Devaurs; Anja Conev; Mark Moll; Gregory Lizée; Lydia E Kavraki
Journal:  JCO Clin Cancer Inform       Date:  2020-07

Review 9.  Reconsidering the association between the major histocompatibility complex and bipolar disorder.

Authors:  Thalita Cristina Figueiredo; João Ricardo Mendes de Oliveira
Journal:  J Mol Neurosci       Date:  2011-10-11       Impact factor: 3.444

10.  A community standard for immunogenomic data reporting and analysis: proposal for a STrengthening the REporting of Immunogenomic Studies statement.

Authors:  J A Hollenbach; S J Mack; P-A Gourraud; R M Single; M Maiers; D Middleton; G Thomson; S G E Marsh; M D Varney
Journal:  Tissue Antigens       Date:  2011-11
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