Literature DB >> 24631581

The MHC class I genes of zebrafish.

Hayley Dirscherl1, Sean C McConnell2, Jeffrey A Yoder3, Jill L O de Jong4.   

Abstract

Major histocompatibility complex (MHC) molecules play a central role in the immune response and in the recognition of non-self. Found in all jawed vertebrate species, including zebrafish and other teleosts, MHC genes are considered the most polymorphic of all genes. In this review we focus on the multi-faceted diversity of zebrafish MHC class I genes, which are classified into three sequence lineages: U, Z, and L. We examine the polygenic, polymorphic, and haplotypic diversity of the zebrafish MHC class I genes, discussing known and postulated functional differences between the different class I lineages. In addition, we provide the first comprehensive nomenclature for the L lineage genes in zebrafish, encompassing at least 15 genes, and characterize their sequence properties. Finally, we discuss how recent findings have shed new light on the remarkably diverse MHC loci of this species.
Copyright © 2014 Elsevier Ltd. All rights reserved.

Entities:  

Keywords:  Haplotype; Histocompatibility; Immunity; MHC; Multigene families; Polymorphism

Mesh:

Substances:

Year:  2014        PMID: 24631581      PMCID: PMC4031684          DOI: 10.1016/j.dci.2014.02.018

Source DB:  PubMed          Journal:  Dev Comp Immunol        ISSN: 0145-305X            Impact factor:   3.636


  87 in total

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Authors:  J Klein
Journal:  Genetics       Date:  2001-10       Impact factor: 4.562

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Authors:  René J M Stet; Corine P Kruiswijk; Brian Dixon
Journal:  Crit Rev Immunol       Date:  2003       Impact factor: 2.214

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Authors:  Kazuhiko Aoyagi; Johannes M Dijkstra; Chun Xia; Ikuo Denda; Mitsuru Ototake; Keiichiro Hashimoto; Teruyuki Nakanishi
Journal:  J Immunol       Date:  2002-01-01       Impact factor: 5.422

4.  Nomenclature for the major histocompatibility complexes of different species: a proposal.

Authors:  J Klein; R E Bontrop; R L Dawkins; H A Erlich; U B Gyllensten; E R Heise; P P Jones; P Parham; E K Wakeland; D I Watkins
Journal:  Immunogenetics       Date:  1990       Impact factor: 2.846

Review 5.  Teleost T and NK cell immunity.

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Review 6.  Cytotoxic T cells in teleost fish.

Authors:  Teruyuki Nakanishi; Hideaki Toda; Yasuhiro Shibasaki; Tomonori Somamoto
Journal:  Dev Comp Immunol       Date:  2011-04-20       Impact factor: 3.636

7.  Evidence that the separation of Mhc class II from class I loci in the zebrafish, Danio rerio, occurred by translocation.

Authors:  Noriyuki Kuroda; Felipe Figueroa; Colm O'hUigin; Jan Klein
Journal:  Immunogenetics       Date:  2002-07-16       Impact factor: 2.846

Review 8.  Zebrafish: a see-through host and a fluorescent toolbox to probe host-pathogen interaction.

Authors:  David M Tobin; Robin C May; Robert T Wheeler
Journal:  PLoS Pathog       Date:  2012-01-05       Impact factor: 6.823

9.  Unraveling the evolution of the Atlantic cod's (Gadus morhua L.) alternative immune strategy.

Authors:  Martin Malmstrøm; Sissel Jentoft; Tone F Gregers; Kjetill S Jakobsen
Journal:  PLoS One       Date:  2013-09-03       Impact factor: 3.240

10.  Comprehensive analysis of MHC class II genes in teleost fish genomes reveals dispensability of the peptide-loading DM system in a large part of vertebrates.

Authors:  Johannes M Dijkstra; Unni Grimholt; Jong Leong; Ben F Koop; Keiichiro Hashimoto
Journal:  BMC Evol Biol       Date:  2013-11-26       Impact factor: 3.260

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  13 in total

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Journal:  Immunogenetics       Date:  2019-04-02       Impact factor: 2.846

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Authors:  Dustin J Wcisel; Tatsuya Ota; Gary W Litman; Jeffrey A Yoder
Journal:  J Exp Zool B Mol Dev Evol       Date:  2017-05-24       Impact factor: 2.656

3.  A comprehensive analysis of teleost MHC class I sequences.

Authors:  Unni Grimholt; Kentaro Tsukamoto; Teruo Azuma; Jong Leong; Ben F Koop; Johannes M Dijkstra
Journal:  BMC Evol Biol       Date:  2015-03-06       Impact factor: 3.260

4.  Holosteans contextualize the role of the teleost genome duplication in promoting the rise of evolutionary novelties in the ray-finned fish innate immune system.

Authors:  Alex Dornburg; Dustin J Wcisel; Katerina Zapfe; Emma Ferraro; Lindsay Roupe-Abrams; Andrew W Thompson; Ingo Braasch; Tatsuya Ota; Jeffrey A Yoder
Journal:  Immunogenetics       Date:  2021-09-11       Impact factor: 2.846

5.  A nonclassical MHC class I U lineage locus in zebrafish with a null haplotypic variant.

Authors:  Hayley Dirscherl; Jeffrey A Yoder
Journal:  Immunogenetics       Date:  2015-08-09       Impact factor: 2.846

Review 6.  Understanding the regulation of vertebrate hematopoiesis and blood disorders - big lessons from a small fish.

Authors:  Anne L Robertson; Serine Avagyan; John M Gansner; Leonard I Zon
Journal:  FEBS Lett       Date:  2016-09-25       Impact factor: 4.124

7.  Evolution and comparative analysis of the bat MHC-I region.

Authors:  Justin H J Ng; Mary Tachedjian; Janine Deakin; James W Wynne; Jie Cui; Volker Haring; Ivano Broz; Honglei Chen; Katherine Belov; Lin-Fa Wang; Michelle L Baker
Journal:  Sci Rep       Date:  2016-02-15       Impact factor: 4.379

8.  Signatures of Crested Ibis MHC Revealed by Recombination Screening and Short-Reads Assembly Strategy.

Authors:  Liao Chang; Shiyang He; Danqing Mao; Yuanhong Liu; Zijun Xiong; Dongke Fu; Bo Li; Shuguang Wei; Xun Xu; Shengbin Li; Hui Yuan
Journal:  PLoS One       Date:  2016-12-20       Impact factor: 3.240

Review 9.  MHC and Evolution in Teleosts.

Authors:  Unni Grimholt
Journal:  Biology (Basel)       Date:  2016-01-19

10.  The spotted gar genome illuminates vertebrate evolution and facilitates human-teleost comparisons.

Authors:  Ingo Braasch; Andrew R Gehrke; Jeramiah J Smith; Kazuhiko Kawasaki; Tereza Manousaki; Jeremy Pasquier; Angel Amores; Thomas Desvignes; Peter Batzel; Julian Catchen; Aaron M Berlin; Michael S Campbell; Daniel Barrell; Kyle J Martin; John F Mulley; Vydianathan Ravi; Alison P Lee; Tetsuya Nakamura; Domitille Chalopin; Shaohua Fan; Dustin Wcisel; Cristian Cañestro; Jason Sydes; Felix E G Beaudry; Yi Sun; Jana Hertel; Michael J Beam; Mario Fasold; Mikio Ishiyama; Jeremy Johnson; Steffi Kehr; Marcia Lara; John H Letaw; Gary W Litman; Ronda T Litman; Masato Mikami; Tatsuya Ota; Nil Ratan Saha; Louise Williams; Peter F Stadler; Han Wang; John S Taylor; Quenton Fontenot; Allyse Ferrara; Stephen M J Searle; Bronwen Aken; Mark Yandell; Igor Schneider; Jeffrey A Yoder; Jean-Nicolas Volff; Axel Meyer; Chris T Amemiya; Byrappa Venkatesh; Peter W H Holland; Yann Guiguen; Julien Bobe; Neil H Shubin; Federica Di Palma; Jessica Alföldi; Kerstin Lindblad-Toh; John H Postlethwait
Journal:  Nat Genet       Date:  2016-03-07       Impact factor: 38.330

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