Literature DB >> 19465926

Genome sequence of the recombinant protein production host Pichia pastoris.

Kristof De Schutter1, Yao-Cheng Lin, Petra Tiels, Annelies Van Hecke, Sascha Glinka, Jacqueline Weber-Lehmann, Pierre Rouzé, Yves Van de Peer, Nico Callewaert.   

Abstract

The methylotrophic yeast Pichia pastoris is widely used for the production of proteins and as a model organism for studying peroxisomal biogenesis and methanol assimilation. P. pastoris strains capable of human-type N-glycosylation are now available, which increases the utility of this organism for biopharmaceutical production. Despite its biotechnological importance, relatively few genetic tools or engineered strains have been generated for P. pastoris. To facilitate progress in these areas, we present the 9.43 Mbp genomic sequence of the GS115 strain of P. pastoris. We also provide manually curated annotation for its 5,313 protein-coding genes.

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Year:  2009        PMID: 19465926     DOI: 10.1038/nbt.1544

Source DB:  PubMed          Journal:  Nat Biotechnol        ISSN: 1087-0156            Impact factor:   54.908


  53 in total

1.  Nonrandom utilization of codon pairs in Escherichia coli.

Authors:  G A Gutman; G W Hatfield
Journal:  Proc Natl Acad Sci U S A       Date:  1989-05       Impact factor: 11.205

2.  Large-scale production of recombinant hepatitis B surface antigen from Pichia pastoris.

Authors:  E Hardy; E Martínez; D Diago; R Díaz; D González; L Herrera
Journal:  J Biotechnol       Date:  2000-02-17       Impact factor: 3.307

3.  In vitro and in vivo properties of recombinant human serum albumin from Pichia pastoris purified by a method of short processing time.

Authors:  H Watanabe; K Yamasaki; U Kragh-Hansen; S Tanase; K Harada; A Suenaga; M Otagiri
Journal:  Pharm Res       Date:  2001-12       Impact factor: 4.200

4.  Codon optimization, expression, and characterization of an internalizing anti-ErbB2 single-chain antibody in Pichia pastoris.

Authors:  Siyi Hu; Liangwei Li; Jingjuan Qiao; Yujie Guo; Liansheng Cheng; Jing Liu
Journal:  Protein Expr Purif       Date:  2005-12-13       Impact factor: 1.650

5.  Genome sequence of the lignocellulose-bioconverting and xylose-fermenting yeast Pichia stipitis.

Authors:  Thomas W Jeffries; Igor V Grigoriev; Jane Grimwood; José M Laplaza; Andrea Aerts; Asaf Salamov; Jeremy Schmutz; Erika Lindquist; Paramvir Dehal; Harris Shapiro; Yong-Su Jin; Volkmar Passoth; Paul M Richardson
Journal:  Nat Biotechnol       Date:  2007-03-04       Impact factor: 54.908

6.  Transcriptomics-based identification of novel factors enhancing heterologous protein secretion in yeasts.

Authors:  Brigitte Gasser; Michael Sauer; Michael Maurer; Gerhard Stadlmayr; Diethard Mattanovich
Journal:  Appl Environ Microbiol       Date:  2007-08-31       Impact factor: 4.792

7.  Engineering of an artificial glycosylation pathway blocked in core oligosaccharide assembly in the yeast Pichia pastoris: production of complex humanized glycoproteins with terminal galactose.

Authors:  Piotr Bobrowicz; Robert C Davidson; Huijuan Li; Thomas I Potgieter; Juergen H Nett; Stephen R Hamilton; Terrance A Stadheim; Robert G Miele; Beata Bobrowicz; Teresa Mitchell; Sebastian Rausch; Eduard Renfer; Stefan Wildt
Journal:  Glycobiology       Date:  2004-06-09       Impact factor: 4.313

8.  In vivo synthesis of mammalian-like, hybrid-type N-glycans in Pichia pastoris.

Authors:  Wouter Vervecken; Vladimir Kaigorodov; Nico Callewaert; Steven Geysens; Kristof De Vusser; Roland Contreras
Journal:  Appl Environ Microbiol       Date:  2004-05       Impact factor: 4.792

Review 9.  Recombinant protein expression in Pichia pastoris.

Authors:  J M Cregg; J L Cereghino; J Shi; D R Higgins
Journal:  Mol Biotechnol       Date:  2000-09       Impact factor: 2.860

10.  Rfam: annotating non-coding RNAs in complete genomes.

Authors:  Sam Griffiths-Jones; Simon Moxon; Mhairi Marshall; Ajay Khanna; Sean R Eddy; Alex Bateman
Journal:  Nucleic Acids Res       Date:  2005-01-01       Impact factor: 16.971

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  170 in total

1.  Reconstructing the fungal tree of life using phylogenomics and a preliminary investigation of the distribution of yeast prion-like proteins in the fungal kingdom.

Authors:  Edgar M Medina; Gary W Jones; David A Fitzpatrick
Journal:  J Mol Evol       Date:  2011-09-22       Impact factor: 2.395

2.  Combined use of fluorescent dyes and flow cytometry to quantify the physiological state of Pichia pastoris during the production of heterologous proteins in high-cell-density fed-batch cultures.

Authors:  Petr Hyka; Thomas Züllig; Claudia Ruth; Verena Looser; Christian Meier; Joachim Klein; Karel Melzoch; Hans-Peter Meyer; Anton Glieder; Karin Kovar
Journal:  Appl Environ Microbiol       Date:  2010-05-14       Impact factor: 4.792

3.  PrimerCE: designing primers for cloning and gene expression.

Authors:  Yinghao Cao; Jian Sun; Jianhui Zhu; Liyun Li; Guozhen Liu
Journal:  Mol Biotechnol       Date:  2010-10       Impact factor: 2.695

4.  Engineering of Yeast Glycoprotein Expression.

Authors:  Charlot De Wachter; Linde Van Landuyt; Nico Callewaert
Journal:  Adv Biochem Eng Biotechnol       Date:  2021       Impact factor: 2.635

5.  Mutant strains of Pichia pastoris with enhanced secretion of recombinant proteins.

Authors:  Sasha Larsen; Jun Weaver; Katherine de Sa Campos; Rhobe Bulahan; Jackson Nguyen; Heather Grove; Amy Huang; Lauren Low; Namphuong Tran; Seth Gomez; Jennifer Yau; Thomas Ilustrisimo; Jessica Kawilarang; Jonathan Lau; Maivi Tranphung; Irene Chen; Christina Tran; Marcia Fox; Joan Lin-Cereghino; Geoff P Lin-Cereghino
Journal:  Biotechnol Lett       Date:  2013-07-24       Impact factor: 2.461

6.  Secretion of an endogenous subtilisin by Pichia pastoris strains GS115 and KM71.

Authors:  Karine Salamin; Dev Sriranganadane; Barbara Léchenne; Olivier Jousson; Michel Monod
Journal:  Appl Environ Microbiol       Date:  2010-05-14       Impact factor: 4.792

7.  Dielectric analysis and multi-cell electrofusion of the yeast Pichia pastoris for electrophysiological studies.

Authors:  Ulrich Terpitz; Sebastian Letschert; Ulrich Bonda; Christoph Spahn; Chonglin Guan; Markus Sauer; Ulrich Zimmermann; Ernst Bamberg; Dirk Zimmermann; Vladimir L Sukhorukov
Journal:  J Membr Biol       Date:  2012-08-08       Impact factor: 1.843

Review 8.  An introduction to the medicinal plant genome project.

Authors:  Shilin Chen; Li Xiang; Xu Guo; Qiushi Li
Journal:  Front Med       Date:  2011-06-22       Impact factor: 4.592

Review 9.  Immunogenicity Risk Assessment for an Engineered Human Cytokine Analogue Expressed in Different Cell Substrates.

Authors:  Paul Chamberlain; Bonita Rup
Journal:  AAPS J       Date:  2020-04-14       Impact factor: 4.009

10.  Reconstruction and visualization of carbohydrate, N-glycosylation pathways in Pichia pastoris CBS7435 using computational and system biology approaches.

Authors:  Akriti Srivastava; Pallavi Somvanshi; Bhartendu Nath Mishra
Journal:  Syst Synth Biol       Date:  2012-12-30
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