Literature DB >> 19464724

Phylogenetic characterization of H5N1 avian influenza viruses isolated in Indonesia from 2003-2007.

Ryo Takano1, Chairul A Nidom, Maki Kiso, Yukiko Muramoto, Shinya Yamada, Yuko Sakai-Tagawa, Catherine Macken, Yoshihiro Kawaoka.   

Abstract

The wide distribution of H5N1 highly pathogenic avian influenza viruses is a global threat to human health. Indonesia has had the largest number of human infections and fatalities caused by these viruses. To understand the enzootic conditions of the viruses in Indonesia, twenty-four H5N1 viruses isolated from poultry from 2003 to 2007 were phylogenetically characterized. Although previous studies exclusively classified the Indonesian viruses into clades 2.1.1-2.1.3, our phylogenetic analyses showed a new sublineage that did not belong to any of the present clades. In addition, novel reassortant viruses were identified that emerged between this new sublineage and other clades in 2005-2006 on Java Island. H5N1 viruses were introduced from Java Island to Sulawesi, Kalimantan, and Sumatra Island on multiple occasions from 2003-2007, causing the geographical expansion of these viruses in Indonesia. These findings identify Java Island as the epicenter of the Indonesian H5N1 virus expansion.

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Year:  2009        PMID: 19464724      PMCID: PMC2861581          DOI: 10.1016/j.virol.2009.04.024

Source DB:  PubMed          Journal:  Virology        ISSN: 0042-6822            Impact factor:   3.616


  19 in total

1.  A simple, fast, and accurate algorithm to estimate large phylogenies by maximum likelihood.

Authors:  Stéphane Guindon; Olivier Gascuel
Journal:  Syst Biol       Date:  2003-10       Impact factor: 15.683

2.  Avian flu: H5N1 virus outbreak in migratory waterfowl.

Authors:  H Chen; G J D Smith; S Y Zhang; K Qin; J Wang; K S Li; R G Webster; J S M Peiris; Y Guan
Journal:  Nature       Date:  2005-07-14       Impact factor: 49.962

3.  A statistical phylogeography of influenza A H5N1.

Authors:  Robert G Wallace; Hoangminh Hodac; Richard H Lathrop; Walter M Fitch
Journal:  Proc Natl Acad Sci U S A       Date:  2007-03-07       Impact factor: 11.205

4.  Highly pathogenic H5N1 influenza virus infection in migratory birds.

Authors:  J Liu; H Xiao; F Lei; Q Zhu; K Qin; X-W Zhang; X-L Zhang; D Zhao; G Wang; Y Feng; J Ma; W Liu; J Wang; G F Gao
Journal:  Science       Date:  2005-07-06       Impact factor: 47.728

5.  Human influenza A H5N1 virus related to a highly pathogenic avian influenza virus.

Authors:  E C Claas; A D Osterhaus; R van Beek; J C De Jong; G F Rimmelzwaan; D A Senne; S Krauss; K F Shortridge; R G Webster
Journal:  Lancet       Date:  1998-02-14       Impact factor: 79.321

6.  Characterization of an avian influenza A (H5N1) virus isolated from a child with a fatal respiratory illness.

Authors:  K Subbarao; A Klimov; J Katz; H Regnery; W Lim; H Hall; M Perdue; D Swayne; C Bender; J Huang; M Hemphill; T Rowe; M Shaw; X Xu; K Fukuda; N Cox
Journal:  Science       Date:  1998-01-16       Impact factor: 47.728

7.  Evolution and adaptation of H5N1 influenza virus in avian and human hosts in Indonesia and Vietnam.

Authors:  G J D Smith; T S P Naipospos; T D Nguyen; M D de Jong; D Vijaykrishna; T B Usman; S S Hassan; T V Nguyen; T V Dao; N A Bui; Y H C Leung; C L Cheung; J M Rayner; J X Zhang; L J Zhang; L L M Poon; K S Li; V C Nguyen; T T Hien; J Farrar; R G Webster; H Chen; J S M Peiris; Y Guan
Journal:  Virology       Date:  2006-05-19       Impact factor: 3.616

8.  Genetic characterization of the pathogenic influenza A/Goose/Guangdong/1/96 (H5N1) virus: similarity of its hemagglutinin gene to those of H5N1 viruses from the 1997 outbreaks in Hong Kong.

Authors:  X Xu; N J Cox; Y Guo
Journal:  Virology       Date:  1999-08-15       Impact factor: 3.616

9.  Emergence of multiple genotypes of H5N1 avian influenza viruses in Hong Kong SAR.

Authors:  Y Guan; J S M Peiris; A S Lipatov; T M Ellis; K C Dyrting; S Krauss; L J Zhang; R G Webster; K F Shortridge
Journal:  Proc Natl Acad Sci U S A       Date:  2002-06-19       Impact factor: 11.205

10.  Establishment of multiple sublineages of H5N1 influenza virus in Asia: implications for pandemic control.

Authors:  H Chen; G J D Smith; K S Li; J Wang; X H Fan; J M Rayner; D Vijaykrishna; J X Zhang; L J Zhang; C T Guo; C L Cheung; K M Xu; L Duan; K Huang; K Qin; Y H C Leung; W L Wu; H R Lu; Y Chen; N S Xia; T S P Naipospos; K Y Yuen; S S Hassan; S Bahri; T D Nguyen; R G Webster; J S M Peiris; Y Guan
Journal:  Proc Natl Acad Sci U S A       Date:  2006-02-10       Impact factor: 11.205

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  16 in total

Review 1.  Ecology of avian influenza viruses in a changing world.

Authors:  Kurt J Vandegrift; Susanne H Sokolow; Peter Daszak; A Marm Kilpatrick
Journal:  Ann N Y Acad Sci       Date:  2010-05       Impact factor: 5.691

2.  Reassortment between avian H5N1 and human H3N2 influenza viruses creates hybrid viruses with substantial virulence.

Authors:  Chengjun Li; Masato Hatta; Chairul A Nidom; Yukiko Muramoto; Shinji Watanabe; Gabriele Neumann; Yoshihiro Kawaoka
Journal:  Proc Natl Acad Sci U S A       Date:  2010-02-22       Impact factor: 11.205

3.  A computationally optimized hemagglutinin virus-like particle vaccine elicits broadly reactive antibodies that protect nonhuman primates from H5N1 infection.

Authors:  Brendan M Giles; Corey J Crevar; Donald M Carter; Stephanie J Bissel; Stacey Schultz-Cherry; Clayton A Wiley; Ted M Ross
Journal:  J Infect Dis       Date:  2012-03-23       Impact factor: 5.226

4.  Evolution and control of H5N1. A better understanding of the evolution and diversity of H5N1 flu virus and its host species in endemic areas could inform more efficient vaccination and control strategies.

Authors:  Yohei Watanabe; Madiha S Ibrahim; Kazuyoshi Ikuta
Journal:  EMBO Rep       Date:  2013-01-11       Impact factor: 8.807

5.  Surveillance of avian influenza viruses in Papua New Guinean poultry, June 2011 to April 2012.

Authors:  Marinjho Jonduo; Sook-San Wong; Nime Kapo; Paskalis Ominipi; Mohammad Abdad; Peter Siba; Pamela McKenzie; Richard Webby; Paul Horwood
Journal:  Western Pac Surveill Response J       Date:  2013-12-19

6.  Antibody titer has positive predictive value for vaccine protection against challenge with natural antigenic-drift variants of H5N1 high-pathogenicity avian influenza viruses from Indonesia.

Authors:  David E Swayne; David L Suarez; Erica Spackman; Samadhan Jadhao; Gwenaelle Dauphin; Mia Kim-Torchetti; James McGrane; John Weaver; Peter Daniels; Frank Wong; Paul Selleck; Agus Wiyono; Risa Indriani; Yuni Yupiana; Elly Sawitri Siregar; Teguh Prajitno; Derek Smith; Ron Fouchier
Journal:  J Virol       Date:  2015-01-21       Impact factor: 5.103

7.  Efficacy of the new neuraminidase inhibitor CS-8958 against H5N1 influenza viruses.

Authors:  Maki Kiso; Shuku Kubo; Makoto Ozawa; Quynh Mai Le; Chairul A Nidom; Makoto Yamashita; Yoshihiro Kawaoka
Journal:  PLoS Pathog       Date:  2010-02-26       Impact factor: 6.823

8.  Synergistic effect of the PDZ and p85β-binding domains of the NS1 protein on virulence of an avian H5N1 influenza A virus.

Authors:  Shufang Fan; Catherine A Macken; Chengjun Li; Makoto Ozawa; Hideo Goto; N F N Iswahyudi; Chairul A Nidom; Hualan Chen; Gabriele Neumann; Yoshihiro Kawaoka
Journal:  J Virol       Date:  2013-02-13       Impact factor: 5.103

9.  A molecular and antigenic survey of H5N1 highly pathogenic avian influenza virus isolates from smallholder duck farms in Central Java, Indonesia during 2007-2008.

Authors:  Hendra Wibawa; Joerg Henning; Frank Wong; Paul Selleck; Akhmad Junaidi; John Bingham; Peter Daniels; Joanne Meers
Journal:  Virol J       Date:  2011-09-07       Impact factor: 4.099

10.  A(H5N1) Virus Evolution in South East Asia.

Authors:  Ramona Alikiiteaga Gutiérrez; Monica Jane Naughtin; Srey Viseth Horm; Sorn San; Philippe Buchy
Journal:  Viruses       Date:  2009-10-06       Impact factor: 5.048

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