Literature DB >> 19458657

Insights into bacterial cellulose biosynthesis by functional metagenomics on Antarctic soil samples.

Renaud Berlemont1, Maud Delsaute, Delphine Pipers, Salvino D'Amico, Georges Feller, Moreno Galleni, Pablo Power.   

Abstract

In this study, the mining of an Antarctic soil sample by functional metagenomics allowed the isolation of a cold-adapted protein (RBcel1) that hydrolyzes only carboxymethyl cellulose. The new enzyme is related to family 5 of the glycosyl hydrolase (GH5) protein from Pseudomonas stutzeri (Pst_2494) and does not possess a carbohydrate-binding domain. The protein was produced and purified to homogeneity. RBcel1 displayed an endoglucanase activity, producing cellobiose and cellotriose, using carboxymethyl cellulose as a substrate. Moreover, the study of pH and the thermal dependence of the hydrolytic activity shows that RBcel1 was active from pH 6 to pH 9 and remained significantly active when temperature decreased (18% of activity at 10 degrees C). It is interesting that RBcel1 was able to synthetize non-reticulated cellulose using cellobiose as a substrate. Moreover, by a combination of bioinformatics and enzyme analysis, the physiological relevance of the RBcel1 protein and its mesophilic homologous Pst_2494 protein from P. stutzeri, A1501, was established as the key enzymes involved in the production of cellulose by bacteria. In addition, RBcel1 and Pst_2494 are the two primary enzymes belonging to the GH5 family involved in this process.

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Year:  2009        PMID: 19458657     DOI: 10.1038/ismej.2009.48

Source DB:  PubMed          Journal:  ISME J        ISSN: 1751-7362            Impact factor:   10.302


  16 in total

1.  Three-dimensional structure of RBcel1, a metagenome-derived psychrotolerant family GH5 endoglucanase.

Authors:  Maud Delsaute; Renaud Berlemont; Dominique Dehareng; Dany Van Elder; Moreno Galleni; Cédric Bauvois
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2013-07-26

2.  Isolation of cold-active, acidic endocellulase from Ladakh soil by functional metagenomics.

Authors:  Archana Bhat; Syed Riyaz-Ul-Hassan; Nasier Ahmad; Nidhi Srivastava; Sarojini Johri
Journal:  Extremophiles       Date:  2013-01-26       Impact factor: 2.395

3.  Carbohydrate-active enzymes identified by metagenomic analysis of deep-sea sediment bacteria.

Authors:  Barbara Klippel; Kerstin Sahm; Alexander Basner; Sigrid Wiebusch; Patrick John; Ute Lorenz; Anke Peters; Fumiyoshi Abe; Kyoma Takahashi; Olaf Kaiser; Alexander Goesmann; Sebastian Jaenicke; Ralf Grote; Koki Horikoshi; Garabed Antranikian
Journal:  Extremophiles       Date:  2014-08-10       Impact factor: 2.395

4.  Phylogenetic distribution of potential cellulases in bacteria.

Authors:  Renaud Berlemont; Adam C Martiny
Journal:  Appl Environ Microbiol       Date:  2012-12-21       Impact factor: 4.792

5.  Functional metagenomic investigations of the human intestinal microbiota.

Authors:  Aimee M Moore; Christian Munck; Morten O A Sommer; Gautam Dantas
Journal:  Front Microbiol       Date:  2011-10-17       Impact factor: 5.640

Review 6.  Biotechnological uses of enzymes from psychrophiles.

Authors:  R Cavicchioli; T Charlton; H Ertan; S Mohd Omar; K S Siddiqui; T J Williams
Journal:  Microb Biotechnol       Date:  2011-03-24       Impact factor: 5.813

7.  Isolation of Cellulolytic Bacillus subtilis Strains from Agricultural Environments.

Authors:  Yu-Kyoung Kim; Shin-Chan Lee; Young-Yun Cho; Hyun-Jeong Oh; Young Hwan Ko
Journal:  ISRN Microbiol       Date:  2012-02-29

8.  Discovery of novel enzymes with industrial potential from a cold and alkaline environment by a combination of functional metagenomics and culturing.

Authors:  Jan Kjølhede Vester; Mikkel Andreas Glaring; Peter Stougaard
Journal:  Microb Cell Fact       Date:  2014-05-20       Impact factor: 5.328

9.  Novel Cold-Adapted Esterase MHlip from an Antarctic Soil Metagenome.

Authors:  Renaud Berlemont; Olivier Jacquin; Maud Delsaute; Marcello La Salla; Jacques Georis; Fabienne Verté; Moreno Galleni; Pablo Power
Journal:  Biology (Basel)       Date:  2013-01-25

10.  Evaluation of a pooled strategy for high-throughput sequencing of cosmid clones from metagenomic libraries.

Authors:  Kathy N Lam; Michael W Hall; Katja Engel; Gregory Vey; Jiujun Cheng; Josh D Neufeld; Trevor C Charles
Journal:  PLoS One       Date:  2014-06-09       Impact factor: 3.240

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