Literature DB >> 19458048

Crystal structure of the membrane-bound bifunctional transglycosylase PBP1b from Escherichia coli.

Ming-Ta Sung1, Yen-Ting Lai, Chia-Ying Huang, Lien-Yang Chou, Hao-Wei Shih, Wei-Chieh Cheng, Chi-Huey Wong, Che Ma.   

Abstract

Drug-resistant bacteria have caused serious medical problems in recent years, and the need for new antibacterial agents is undisputed. Transglycosylase, a multidomain membrane protein essential for cell wall synthesis, is an excellent target for the development of new antibiotics. Here, we determined the X-ray crystal structure of the bifunctional transglycosylase penicillin-binding protein 1b (PBP1b) from Escherichia coli in complex with its inhibitor moenomycin to 2.16-A resolution. In addition to the transglycosylase and transpeptidase domains, our structure provides a complete visualization of this important antibacterial target, and reveals a domain for protein-protein interaction and a transmembrane helix domain essential for substrate binding, enzymatic activity, and membrane orientation.

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Year:  2009        PMID: 19458048      PMCID: PMC2689995          DOI: 10.1073/pnas.0904030106

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  33 in total

Review 1.  Automation of the collection and processing of X-ray diffraction data -- a generic approach.

Authors:  A G W Leslie; H R Powell; G Winter; O Svensson; D Spruce; S McSweeney; D Love; S Kinder; E Duke; C Nave
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2002-10-21

2.  Crystal structure of a peptidoglycan glycosyltransferase suggests a model for processive glycan chain synthesis.

Authors:  Yanqiu Yuan; Dianah Barrett; Yi Zhang; Daniel Kahne; Piotr Sliz; Suzanne Walker
Journal:  Proc Natl Acad Sci U S A       Date:  2007-03-08       Impact factor: 11.205

3.  Design of protein membrane interaction inhibitors by virtual ligand screening, proof of concept with the C2 domain of factor V.

Authors:  Kenneth Segers; Olivier Sperandio; Markus Sack; Rainer Fischer; Maria A Miteva; Jan Rosing; Gerry A F Nicolaes; Bruno O Villoutreix
Journal:  Proc Natl Acad Sci U S A       Date:  2007-07-23       Impact factor: 11.205

4.  The bacteria fight back.

Authors:  Gary Taubes
Journal:  Science       Date:  2008-07-18       Impact factor: 47.728

5.  Microbiology. Desperately seeking new antibiotics.

Authors:  David J Payne
Journal:  Science       Date:  2008-09-19       Impact factor: 47.728

6.  Cell wall peptidoglycan architecture in Bacillus subtilis.

Authors:  Emma J Hayhurst; Lekshmi Kailas; Jamie K Hobbs; Simon J Foster
Journal:  Proc Natl Acad Sci U S A       Date:  2008-09-10       Impact factor: 11.205

7.  Outer membrane localization of murein hydrolases: MltA, a third lipoprotein lytic transglycosylase in Escherichia coli.

Authors:  J Lommatzsch; M F Templin; A R Kraft; W Vollmer; J V Höltje
Journal:  J Bacteriol       Date:  1997-09       Impact factor: 3.490

8.  Automated MAD and MIR structure solution.

Authors:  T C Terwilliger; J Berendzen
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  1999-04

9.  A kinetic characterization of the glycosyltransferase activity of Eschericia coli PBP1b and development of a continuous fluorescence assay.

Authors:  Benjamin Schwartz; Jay A Markwalder; Steven P Seitz; Yi Wang; Ross L Stein
Journal:  Biochemistry       Date:  2002-10-15       Impact factor: 3.162

10.  Structural analysis of the contacts anchoring moenomycin to peptidoglycan glycosyltransferases and implications for antibiotic design.

Authors:  Yanqiu Yuan; Shinichiro Fuse; Bohdan Ostash; Piotr Sliz; Daniel Kahne; Suzanne Walker
Journal:  ACS Chem Biol       Date:  2008-07-18       Impact factor: 5.100

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  64 in total

1.  Identification of Salmonella enterica serovar Pullorum antigenic determinants expressed in vivo.

Authors:  Qiuchun Li; Yachen Hu; Jing Chen; Zhicheng Liu; Jun Han; Lin Sun; Xinan Jiao
Journal:  Infect Immun       Date:  2013-06-17       Impact factor: 3.441

2.  Penicillin-binding protein 5 can form a homo-oligomeric complex in the inner membrane of Escherichia coli.

Authors:  Karl Skoog; Filippa Stenberg Bruzell; Aurélie Ducroux; Mårten Hellberg; Henrik Johansson; Janne Lehtiö; Martin Högbom; Daniel O Daley
Journal:  Protein Sci       Date:  2011-07-13       Impact factor: 6.725

3.  A computational evaluation of the mechanism of penicillin-binding protein-catalyzed cross-linking of the bacterial cell wall.

Authors:  Qicun Shi; Samy O Meroueh; Jed F Fisher; Shahriar Mobashery
Journal:  J Am Chem Soc       Date:  2011-03-18       Impact factor: 15.419

4.  Coarse-grained simulations of bacterial cell wall growth reveal that local coordination alone can be sufficient to maintain rod shape.

Authors:  Lam T Nguyen; James C Gumbart; Morgan Beeby; Grant J Jensen
Journal:  Proc Natl Acad Sci U S A       Date:  2015-06-30       Impact factor: 11.205

Review 5.  Cell-Wall Recycling of the Gram-Negative Bacteria and the Nexus to Antibiotic Resistance.

Authors:  David A Dik; Jed F Fisher; Shahriar Mobashery
Journal:  Chem Rev       Date:  2018-05-30       Impact factor: 60.622

6.  A docking-based receptor library of antibiotics and its novel application in predicting chronic mixture toxicity for environmental risk assessment.

Authors:  Xiaoming Zou; Xianghong Zhou; Zhifen Lin; Ziqing Deng; Daqiang Yin
Journal:  Environ Monit Assess       Date:  2012-11-11       Impact factor: 2.513

7.  The role of the substrate lipid in processive glycan polymerization by the peptidoglycan glycosyltransferases.

Authors:  Deborah L Perlstein; Tsung-Shing Andrew Wang; Emma H Doud; Daniel Kahne; Suzanne Walker
Journal:  J Am Chem Soc       Date:  2010-01-13       Impact factor: 15.419

8.  Septal and lateral wall localization of PBP5, the major D,D-carboxypeptidase of Escherichia coli, requires substrate recognition and membrane attachment.

Authors:  Lakshmiprasad Potluri; Aneta Karczmarek; Jolanda Verheul; Andre Piette; Jean-Marc Wilkin; Nadine Werth; Manuel Banzhaf; Waldemar Vollmer; Kevin D Young; Martine Nguyen-Distèche; Tanneke den Blaauwen
Journal:  Mol Microbiol       Date:  2010-06-07       Impact factor: 3.501

Review 9.  Filling holes in peptidoglycan biogenesis of Escherichia coli.

Authors:  Natividad Ruiz
Journal:  Curr Opin Microbiol       Date:  2016-07-22       Impact factor: 7.934

10.  Tuning the moenomycin pharmacophore to enable discovery of bacterial cell wall synthesis inhibitors.

Authors:  Christian M Gampe; Hirokazu Tsukamoto; Emma H Doud; Suzanne Walker; Daniel Kahne
Journal:  J Am Chem Soc       Date:  2013-03-04       Impact factor: 15.419

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