Literature DB >> 19457568

Scaling laws in functional genome content across prokaryotic clades and lifestyles.

Nacho Molina1, Erik van Nimwegen.   

Abstract

For high-level functional categories that are represented in almost all prokaryotic genomes, the numbers of genes in these categories scale as power-laws in the total number of genes. We present a comprehensive analysis of the variation in these scaling laws across prokaryotic clades and lifestyles. For the large majority of functional categories, including transcription regulators, the inferred scaling laws are statistically indistinguishable across clades and lifestyles, supporting the simple hypothesis that these scaling laws are universally shared by all prokaryotes.

Mesh：

Year:  2009        PMID： 19457568     DOI： 10.1016/j.tig.2009.04.004

Source DB:  PubMed          Journal:  Trends Genet        ISSN： 0168-9525            Impact factor:   11.639


  24 in total

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2.  Defense islands in bacterial and archaeal genomes and prediction of novel defense systems.

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Journal:  J Bacteriol       Date:  2011-09-09       Impact factor: 3.490

3.  Theory of prokaryotic genome evolution.

Authors:  Itamar Sela; Yuri I Wolf; Eugene V Koonin
Journal:  Proc Natl Acad Sci U S A       Date:  2016-10-04       Impact factor: 11.205

4.  Non-homologous isofunctional enzymes: a systematic analysis of alternative solutions in enzyme evolution.

Authors:  Marina V Omelchenko; Michael Y Galperin; Yuri I Wolf; Eugene V Koonin
Journal:  Biol Direct       Date:  2010-04-30       Impact factor: 4.540

Review 5.  Constraints and plasticity in genome and molecular-phenome evolution.

Authors:  Eugene V Koonin; Yuri I Wolf
Journal:  Nat Rev Genet       Date:  2010-07       Impact factor: 53.242

6.  Family-specific scaling laws in bacterial genomes.

Authors:  Eleonora De Lazzari; Jacopo Grilli; Sergei Maslov; Marco Cosentino Lagomarsino
Journal:  Nucleic Acids Res       Date:  2017-07-27       Impact factor: 16.971

7.  Diversification of R2R3-MYB Transcription Factors in the Tomato Family Solanaceae.

Authors:  Daniel J Gates; Susan R Strickler; Lukas A Mueller; Bradley J S C Olson; Stacey D Smith
Journal:  J Mol Evol       Date:  2016-06-30       Impact factor: 2.395

8.  Are there laws of genome evolution?

Authors:  Eugene V Koonin
Journal:  PLoS Comput Biol       Date:  2011-08-25       Impact factor: 4.475

9.  Origin and evolution of gene families in Bacteria and Archaea.

Authors:  R Eric Collins; Hugh Merz; Paul G Higgs
Journal:  BMC Bioinformatics       Date:  2011-10-05       Impact factor: 3.169

10.  Comparative analysis of Mycobacterium and related Actinomycetes yields insight into the evolution of Mycobacterium tuberculosis pathogenesis.

Authors:  Abigail Manson McGuire; Brian Weiner; Sang Tae Park; Ilan Wapinski; Sahadevan Raman; Gregory Dolganov; Matthew Peterson; Robert Riley; Jeremy Zucker; Thomas Abeel; Jared White; Peter Sisk; Christian Stolte; Mike Koehrsen; Robert T Yamamoto; Milena Iacobelli-Martinez; Matthew J Kidd; Andreia M Maer; Gary K Schoolnik; Aviv Regev; James Galagan
Journal:  BMC Genomics       Date:  2012-03-28       Impact factor: 3.969
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