Literature DB >> 19447949

Substrate specificity of a mannose-6-phosphate isomerase from Bacillus subtilis and its application in the production of L-ribose.

Soo-Jin Yeom1, Jung-Hwan Ji, Nam-Hee Kim, Chang-Su Park, Deok-Kun Oh.   

Abstract

The uncharacterized gene previously proposed as a mannose-6-phosphate isomerase from Bacillus subtilis was cloned and expressed in Escherichia coli. The maximal activity of the recombinant enzyme was observed at pH 7.5 and 40 degrees C in the presence of 0.5 mM Co(2+). The isomerization activity was specific for aldose substrates possessing hydroxyl groups oriented in the same direction at the C-2 and C-3 positions, such as the d and l forms of ribose, lyxose, talose, mannose, and allose. The enzyme exhibited the highest activity for l-ribulose among all pentoses and hexoses. Thus, L-ribose, as a potential starting material for many L-nucleoside-based pharmaceutical compounds, was produced at 213 g/liter from 300-g/liter L-ribulose by mannose-6-phosphate isomerase at 40 degrees C for 3 h, with a conversion yield of 71% and a volumetric productivity of 71 g liter(-1) h(-1).

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Year:  2009        PMID: 19447949      PMCID: PMC2708437          DOI: 10.1128/AEM.00310-09

Source DB:  PubMed          Journal:  Appl Environ Microbiol        ISSN: 0099-2240            Impact factor:   4.792


  20 in total

1.  Development of a selection system for the detection of L-ribose isomerase expressing mutants of Escherichia coli.

Authors:  Cassandra De Muynck; Jef Van der Borght; Marjan De Mey; Sofie L De Maeseneire; Inge N A Van Bogaert; Joeri Beauprez; Wim Soetaert; Erick Vandamme
Journal:  Appl Microbiol Biotechnol       Date:  2007-07-10       Impact factor: 4.813

2.  Substrate specificity of a galactose 6-phosphate isomerase from Lactococcus lactis that produces d-allose from d-psicose.

Authors:  Ha-Young Park; Chang-Su Park; Hye-Jung Kim; Deok-Kun Oh
Journal:  J Biotechnol       Date:  2007-08-15       Impact factor: 3.307

3.  Studies on phosphomannose isomerase. 3. A mechanism for catalysis and for the role of zinc in the enzymatic and the nonenzymatic isomerization.

Authors:  R W Gracy; E A Noltmann
Journal:  J Biol Chem       Date:  1968-10-25       Impact factor: 5.157

4.  Cloning and characterization of a novel gene encoding L-ribose isomerase from Acinetobacter sp. strain DL-28 in Escherichia coli.

Authors:  R M Mizanur; G Takata; K Izumori
Journal:  Biochim Biophys Acta       Date:  2001-10-31

5.  Characterization of a novel D-lyxose isomerase from Cohnella laevoribosii RI-39 sp. nov.

Authors:  Eun-Ah Cho; Dong-Woo Lee; Yun-Hwan Cha; Sang-Jae Lee; Heung-Chae Jung; Jae-Gu Pan; Yu-Ryang Pyun
Journal:  J Bacteriol       Date:  2006-12-22       Impact factor: 3.490

6.  Stochastic boundary molecular dynamics simulation of L-ribose in the active site of Actinoplanes missouriensis xylose isomerase and its Val135Asn mutant with improved reaction rate.

Authors:  Harri Santa; Juha Kammonen; Olli Lehtonen; Johanna Karimäki; Ossi Pastinen; Matti Leisola; Ossi Turunen
Journal:  Biochim Biophys Acta       Date:  2005-05-20

7.  Improved protocols for quantitative determination of metabolites from biological samples using high performance ionic-exchange chromatography with conductimetric and pulsed amperometric detection.

Authors: 
Journal:  Enzyme Microb Technol       Date:  2000-06-01       Impact factor: 3.493

8.  Novel substrates of a ribose-5-phosphate isomerase from Clostridium thermocellum.

Authors:  Ran-Young Yoon; Soo-Jin Yeom; Hye-Jung Kim; Deok-Kun Oh
Journal:  J Biotechnol       Date:  2008-10-15       Impact factor: 3.307

9.  Efficient production of L-ribose with a recombinant Escherichia coli biocatalyst.

Authors:  Ryan D Woodyer; Nathan J Wymer; F Michael Racine; Shama N Khan; Badal C Saha
Journal:  Appl Environ Microbiol       Date:  2008-03-14       Impact factor: 4.792

10.  Substrate specificity of a glucose-6-phosphate isomerase from Pyrococcus furiosus for monosaccharides.

Authors:  Ran-Young Yoon; Soo-Jin Yeom; Chang-Su Park; Deok-Kun Oh
Journal:  Appl Microbiol Biotechnol       Date:  2009-01-22       Impact factor: 4.813

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  14 in total

1.  Structure-based function discovery of an enzyme for the hydrolysis of phosphorylated sugar lactones.

Authors:  Dao Feng Xiang; Peter Kolb; Alexander A Fedorov; Chengfu Xu; Elena V Fedorov; Tamari Narindoshivili; Howard J Williams; Brian K Shoichet; Steven C Almo; Frank M Raushel
Journal:  Biochemistry       Date:  2012-02-15       Impact factor: 3.162

2.  Production of L-ribose from L-ribulose by a triple-site variant of mannose-6-phosphate isomerase from Geobacillus thermodenitrificans.

Authors:  Yu-Ri Lim; Soo-Jin Yeom; Deok-Kun Oh
Journal:  Appl Environ Microbiol       Date:  2012-03-23       Impact factor: 4.792

3.  Overexpression, crystallization and preliminary X-ray diffraction analysis of L-ribose isomerase from Acinetobacter sp. strain DL-28.

Authors:  Hiromi Yoshida; Misa Teraoka; Akihide Yoshihara; Ken Izumori; Shigehiro Kamitori
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2011-09-30

4.  Substrate specificity of the Bacillus licheniformis lyxose isomerase YdaE and its application in in vitro catalysis for bioproduction of lyxose and glucose by two-step isomerization.

Authors:  Darshan H Patel; Seung Gon Wi; Seong-Gene Lee; Dae-Seok Lee; Youn-ho Song; Hyeun-Jong Bae
Journal:  Appl Environ Microbiol       Date:  2011-03-18       Impact factor: 4.792

5.  Characterization of a mannose-6-phosphate isomerase from Thermus thermophilus and increased L-ribose production by its R142N mutant.

Authors:  Soo-Jin Yeom; Eun-Sun Seo; Bi-Na Kim; Yeong-Su Kim; Deok-Kun Oh
Journal:  Appl Environ Microbiol       Date:  2010-11-29       Impact factor: 4.792

Review 6.  Metabolism Shapes the Cell.

Authors:  Anthony M Sperber; Jennifer K Herman
Journal:  J Bacteriol       Date:  2017-05-09       Impact factor: 3.490

7.  Development of novel sugar isomerases by optimization of active sites in phosphosugar isomerases for monosaccharides.

Authors:  Soo-Jin Yeom; Yeong-Su Kim; Deok-Kun Oh
Journal:  Appl Environ Microbiol       Date:  2012-11-30       Impact factor: 4.792

8.  Two-step enzymatic synthesis of 6-deoxy-L-psicose.

Authors:  Liuqing Wen; Kenneth Huang; Yuan Zheng; Junqiang Fang; Shukkoor Muhammed Kondengaden; Peng George Wang
Journal:  Tetrahedron Lett       Date:  2016-07-06       Impact factor: 2.415

9.  L-ribose production from L-arabinose by using purified L-arabinose isomerase and mannose-6-phosphate isomerase from Geobacillus thermodenitrificans.

Authors:  Soo-Jin Yeom; Nam-Hee Kim; Chang-Su Park; Deok-Kun Oh
Journal:  Appl Environ Microbiol       Date:  2009-09-11       Impact factor: 4.792

10.  The Extracellular Wall-Bound β-N-Acetylglucosaminidase from Lactobacillus casei Is Involved in the Metabolism of the Human Milk Oligosaccharide Lacto-N-Triose.

Authors:  Gonzalo N Bidart; Jesús Rodríguez-Díaz; María J Yebra
Journal:  Appl Environ Microbiol       Date:  2015-11-06       Impact factor: 4.792

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