Literature DB >> 1944221

Nucleotide sequence of genes hrdA, hrdC, and hrdD from Streptomyces coelicolor A3(2) having similarity to rpoD genes.

K Tanaka1, T Shiina, H Takahashi.   

Abstract

The complete nucleotide sequences were determined of hrdA, hrdC, and hrdD from Streptomyces coelicolor A3(2). They indicate the presence of a single open reading frame in each gene coding for polypeptides of 396 (43,747 daltons), 339 (38,173 daltons), and 332 amino acid residues (37,190 daltons), respectively. These amino acid sequences revealed extensive similarities with the principal sigma factors of Bacillus subtilis, Escherichia coli, Mxyococcus xanthus, Pseudomonas aeruginosa, and also the katF gene product of E. coli. Besides the highly conserved amino acid residues in the "rpoD box" region, alignment of hrd gene products and the known principal sigma factors and sigma-related factors allowed us to postulate a common basic structure for the principal sigma type factors as distinct from the alternative sigma factors.

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Year:  1991        PMID： 1944221     DOI： 10.1007/bf00267453

Source DB:  PubMed          Journal:  Mol Gen Genet        ISSN： 0026-8925


  21 in total

1.  Cloning and DNA sequence of the gene coding for the major sigma factor from Myxococcus xanthus.

Authors:  S Inouye
Journal:  J Bacteriol       Date:  1990-01       Impact factor: 3.490

2.  RNA polymerase heterogeneity in Streptomyces coelicolor.

Authors:  J Westpheling; M Ranes; R Losick
Journal:  Nature       Date:  1985 Jan 3-9       Impact factor: 49.962

Review 3.  Structure and function of bacterial sigma factors.

Authors:  J D Helmann; M J Chamberlin
Journal:  Annu Rev Biochem       Date:  1988       Impact factor: 23.643

4.  The nucleotide sequence of a 16S rRNA gene from Streptomyces coelicolor A3(2)

Authors:  H A Baylis; M J Bibb
Journal:  Nucleic Acids Res       Date:  1987-09-11       Impact factor: 16.971

5.  Multiple principal sigma factor homologs in eubacteria: identification of the "rpoD box".

Authors:  K Tanaka; T Shiina; H Takahashi
Journal:  Science       Date:  1988-11-18       Impact factor: 47.728

6.  Cloning and physical characterization of katE and katF required for catalase HPII expression in Escherichia coli.

Authors:  M R Mulvey; P A Sorby; B L Triggs-Raine; P C Loewen
Journal:  Gene       Date:  1988-12-20       Impact factor: 3.688

7.  The relationship between base composition and codon usage in bacterial genes and its use for the simple and reliable identification of protein-coding sequences.

Authors:  M J Bibb; P R Findlay; M W Johnson
Journal:  Gene       Date:  1984-10       Impact factor: 3.688

8.  Cloning, disruption, and transcriptional analysis of three RNA polymerase sigma factor genes of Streptomyces coelicolor A3(2).

Authors:  M J Buttner; K F Chater; M J Bibb
Journal:  J Bacteriol       Date:  1990-06       Impact factor: 3.490

9.  Cloning and analysis of the gene (rpoDA) for the principal sigma factor of Pseudomonas aeruginosa.

Authors:  K Tanaka; H Takahashi
Journal:  Biochim Biophys Acta       Date:  1991-05-02

10.  DNA sequencing with chain-terminating inhibitors.

Authors:  F Sanger; S Nicklen; A R Coulson
Journal:  Proc Natl Acad Sci U S A       Date:  1977-12       Impact factor: 11.205
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  20 in total

1.  Identification and inactivation of three group 2 sigma factor genes in Anabaena sp. strain PCC 7120.

Authors:  I Y Khudyakov; J W Golden
Journal:  J Bacteriol       Date:  2001-11       Impact factor: 3.490

2.  Identification of multiple RNA polymerase sigma factor homologs in the cyanobacterium Anabaena sp. strain PCC 7120: cloning, expression, and inactivation of the sigB and sigC genes.

Authors:  B Brahamsha; R Haselkorn
Journal:  J Bacteriol       Date:  1992-11       Impact factor: 3.490

3.  Construction and characterization of Streptomyces coelicolor A3(2) mutants that are multiply deficient in the nonessential hrd-encoded RNA polymerase sigma factors.

Authors:  M J Buttner; C G Lewis
Journal:  J Bacteriol       Date:  1992-08       Impact factor: 3.490

4.  Transcription of two sigma 70 homologue genes, sigA and sigB, in stationary-phase Mycobacterium tuberculosis.

Authors:  Y Hu; A R Coates
Journal:  J Bacteriol       Date:  1999-01       Impact factor: 3.490

5.  redD and actII-ORF4, pathway-specific regulatory genes for antibiotic production in Streptomyces coelicolor A3(2), are transcribed in vitro by an RNA polymerase holoenzyme containing sigma hrdD.

Authors:  T Fujii; H C Gramajo; E Takano; M J Bibb
Journal:  J Bacteriol       Date:  1996-06       Impact factor: 3.490

6.  Molecular systematic studies of eubacteria, using sigma70-type sigma factors of group 1 and group 2.

Authors:  T M Gruber; D A Bryant
Journal:  J Bacteriol       Date:  1997-03       Impact factor: 3.490

7.  Identification of sigma factors for growth phase-related promoter selectivity of RNA polymerases from Streptomyces coelicolor A3(2).

Authors:  J G Kang; M Y Hahn; A Ishihama; J H Roe
Journal:  Nucleic Acids Res       Date:  1997-07-01       Impact factor: 16.971

8.  Bacterial RNA polymerases: structural and functional relationships.

Authors:  R E Glass; R S Hayward
Journal:  World J Microbiol Biotechnol       Date:  1993-07       Impact factor: 3.312

9.  Computer assisted identification and classification of streptomycete promoters.

Authors:  W R Bourn; B Babb
Journal:  Nucleic Acids Res       Date:  1995-09-25       Impact factor: 16.971

10.  Sporulation and primary sigma factor homologous genes in Clostridium acetobutylicum.

Authors:  U Sauer; A Treuner; M Buchholz; J D Santangelo; P Dürre
Journal:  J Bacteriol       Date:  1994-11       Impact factor: 3.490
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