Literature DB >> 19439564

Figure mining for biomedical research.

Raul Rodriguez-Esteban1, Ivan Iossifov.   

Abstract

MOTIVATION: Figures from biomedical articles contain valuable information difficult to reach without specialized tools. Currently, there is no search engine that can retrieve specific figure types.
RESULTS: This study describes a retrieval method that takes advantage of principles in image understanding, text mining and optical character recognition (OCR) to retrieve figure types defined conceptually. A search engine was developed to retrieve tables and figure types to aid computational and experimental research. AVAILABILITY: http://iossifovlab.cshl.edu/figurome/.

Mesh:

Year:  2009        PMID: 19439564     DOI: 10.1093/bioinformatics/btp318

Source DB:  PubMed          Journal:  Bioinformatics        ISSN: 1367-4803            Impact factor:   6.937


  11 in total

1.  Mining and integration of pathway diagrams from imaging data.

Authors:  Sergey Kozhenkov; Michael Baitaluk
Journal:  Bioinformatics       Date:  2012-01-20       Impact factor: 6.937

2.  LINNAEUS: a species name identification system for biomedical literature.

Authors:  Martin Gerner; Goran Nenadic; Casey M Bergman
Journal:  BMC Bioinformatics       Date:  2010-02-11       Impact factor: 3.169

3.  Biomedical text mining for research rigor and integrity: tasks, challenges, directions.

Authors:  Halil Kilicoglu
Journal:  Brief Bioinform       Date:  2018-11-27       Impact factor: 11.622

4.  Bar charts detection and analysis in biomedical literature of PubMed Central.

Authors:  Ying He; Xiaohan Yu; Yangjing Gan; Tujin Zhu; Shengwu Xiong; Jing Peng; Lun Hu; Guang Xu; Xiaohui Yuan
Journal:  AMIA Annu Symp Proc       Date:  2018-04-16

5.  Finding and accessing diagrams in biomedical publications.

Authors:  Tobias Kuhn; ThaiBinh Luong; Michael Krauthammer
Journal:  AMIA Annu Symp Proc       Date:  2012-11-03

6.  Complementary ensemble clustering of biomedical data.

Authors:  Samah Jamal Fodeh; Cynthia Brandt; Thai Binh Luong; Ali Haddad; Martin Schultz; Terrence Murphy; Michael Krauthammer
Journal:  J Biomed Inform       Date:  2013-02-27       Impact factor: 6.317

7.  Mining images in biomedical publications: Detection and analysis of gel diagrams.

Authors:  Tobias Kuhn; Mate Levente Nagy; Thaibinh Luong; Michael Krauthammer
Journal:  J Biomed Semantics       Date:  2014-02-25

Review 8.  Mining biomedical images towards valuable information retrieval in biomedical and life sciences.

Authors:  Zeeshan Ahmed; Saman Zeeshan; Thomas Dandekar
Journal:  Database (Oxford)       Date:  2016-08-18       Impact factor: 3.451

9.  Biomedical text mining and its applications.

Authors:  Raul Rodriguez-Esteban
Journal:  PLoS Comput Biol       Date:  2009-12-24       Impact factor: 4.475

10.  Systematic review automation technologies.

Authors:  Guy Tsafnat; Paul Glasziou; Miew Keen Choong; Adam Dunn; Filippo Galgani; Enrico Coiera
Journal:  Syst Rev       Date:  2014-07-09
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