Literature DB >> 19439436

The cellular geometry of growth drives the amino acid economy of Caenorhabditis elegans.

Jonathan Swire1, Silke Fuchs, Jacob G Bundy, Armand M Leroi.   

Abstract

The nematode Caenorhabditis elegans grows largely by increases in cell size. As a consequence of this, the surface: volume ratio of its cells must decline in the course of postembryonic growth. Here we use transcriptomic and metabolomic data to show that this change in geometry can explain a variety of phenomena during growth, including: (i) changes in the relative expression levels of cytoplasmic and membrane proteins; (ii) changes in the relative usage of the twenty amino acids in expressed proteins, as estimated by changes in the transcriptome; and (iii) changes in metabolite pools of free amino acids. We expect these relations to be universal in single cells and in whole multicellular organisms that grow largely by increases in cell size, but not those that grow by cell proliferation.

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Year:  2009        PMID: 19439436      PMCID: PMC2839950          DOI: 10.1098/rspb.2009.0354

Source DB:  PubMed          Journal:  Proc Biol Sci        ISSN: 0962-8452            Impact factor:   5.349


  45 in total

1.  Post-embryonic cell lineages of the nematode, Caenorhabditis elegans.

Authors:  J E Sulston; H R Horvitz
Journal:  Dev Biol       Date:  1977-03       Impact factor: 3.582

2.  The embryonic cell lineage of the nematode Caenorhabditis elegans.

Authors:  J E Sulston; E Schierenberg; J G White; J N Thomson
Journal:  Dev Biol       Date:  1983-11       Impact factor: 3.582

3.  A simple method for displaying the hydropathic character of a protein.

Authors:  J Kyte; R F Doolittle
Journal:  J Mol Biol       Date:  1982-05-05       Impact factor: 5.469

4.  A Caenorhabditis elegans TGF-beta, DBL-1, controls the expression of LON-1, a PR-related protein, that regulates polyploidization and body length.

Authors:  Kiyokazu Morita; Anthony J Flemming; Yukiko Sugihara; Makoto Mochii; Yo Suzuki; Satoru Yoshida; William B Wood; Yuji Kohara; Armand M Leroi; Naoto Ueno
Journal:  EMBO J       Date:  2002-03-01       Impact factor: 11.598

5.  Increased or decreased levels of Caenorhabditis elegans lon-3, a gene encoding a collagen, cause reciprocal changes in body length.

Authors:  Josefin Nyström; Zai-Zhong Shen; Margareta Aili; Anthony J Flemming; Armand Leroi; Simon Tuck
Journal:  Genetics       Date:  2002-05       Impact factor: 4.562

6.  Description and interpretation of adaptive evolution of Escherichia coli K-12 MG1655 by using a genome-scale in silico metabolic model.

Authors:  Stephen S Fong; Jennifer Y Marciniak; Bernhard Ø Palsson
Journal:  J Bacteriol       Date:  2003-11       Impact factor: 3.490

7.  Reconstruction and validation of Saccharomyces cerevisiae iND750, a fully compartmentalized genome-scale metabolic model.

Authors:  Natalie C Duarte; Markus J Herrgård; Bernhard Ø Palsson
Journal:  Genome Res       Date:  2004-06-14       Impact factor: 9.043

8.  Extreme polyploidy in a large bacterium.

Authors:  Jennifer E Mendell; Kendall D Clements; J Howard Choat; Esther R Angert
Journal:  Proc Natl Acad Sci U S A       Date:  2008-04-29       Impact factor: 11.205

9.  The genetics of Caenorhabditis elegans.

Authors:  S Brenner
Journal:  Genetics       Date:  1974-05       Impact factor: 4.562

10.  Gene expression during the life cycle of Drosophila melanogaster.

Authors:  Michelle N Arbeitman; Eileen E M Furlong; Farhad Imam; Eric Johnson; Brian H Null; Bruce S Baker; Mark A Krasnow; Matthew P Scott; Ronald W Davis; Kevin P White
Journal:  Science       Date:  2002-09-27       Impact factor: 47.728

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  8 in total

1.  Fourier transform infrared microspectroscopy for the analysis of the biochemical composition of C. elegans worms.

Authors:  Ming Sheng; András Gorzsás; Simon Tuck
Journal:  Worm       Date:  2016-02-18

2.  Metabolome and proteome changes with aging in Caenorhabditis elegans.

Authors:  Neil Copes; Clare Edwards; Dale Chaput; Mariam Saifee; Iosif Barjuca; Daniel Nelson; Alyssa Paraggio; Patrick Saad; David Lipps; Stanley M Stevens; Patrick C Bradshaw
Journal:  Exp Gerontol       Date:  2015-09-21       Impact factor: 4.032

3.  Morphological and biological characterization of cell line developed from bovine Echinococcus granulosus.

Authors:  Claudia I Echeverría; Dora M Isolabella; Elio A Prieto Gonzalez; Araceli Leonardelli; Laura Prada; Alina Perrone; Alicia G Fuchs
Journal:  In Vitro Cell Dev Biol Anim       Date:  2010-09-16       Impact factor: 2.416

4.  A metabolic signature of long life in Caenorhabditis elegans.

Authors:  Silke Fuchs; Jacob G Bundy; Sarah K Davies; Jonathan M Viney; Jonathan S Swire; Armand M Leroi
Journal:  BMC Biol       Date:  2010-02-10       Impact factor: 7.431

5.  The mutational structure of metabolism in Caenorhabditis elegans.

Authors:  Sarah K Davies; Armand Leroi; Austin Burt; Jacob G Bundy; Charles F Baer
Journal:  Evolution       Date:  2016-08-24       Impact factor: 3.694

6.  Mechanisms of amino acid-mediated lifespan extension in Caenorhabditis elegans.

Authors:  Clare Edwards; John Canfield; Neil Copes; Andres Brito; Muhammad Rehan; David Lipps; Jessica Brunquell; Sandy D Westerheide; Patrick C Bradshaw
Journal:  BMC Genet       Date:  2015-02-03       Impact factor: 2.797

Review 7.  Metabolic regulation of lifespan from a C. elegans perspective.

Authors:  Kathrine B Dall; Nils J Færgeman
Journal:  Genes Nutr       Date:  2019-08-15       Impact factor: 5.523

Review 8.  How Metabolic Rate Relates to Cell Size.

Authors:  Douglas S Glazier
Journal:  Biology (Basel)       Date:  2022-07-25
  8 in total

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