Literature DB >> 19439022

Genomic disorders ten years on.

James R Lupski1.   

Abstract

It is now becoming generally accepted that a significant amount of human genetic variation is due to structural changes of the genome rather than to base-pair changes in the DNA. As for base-pair changes, knowledge of gene and genome function has been informed by structural alterations that convey clinical phenotypes. Genomic disorders are a class of human conditions that result from structural changes of the human genome that convey traits or susceptibility to traits. The path to the delineation of genomic disorders is intertwined with the evolving technologies that have enabled the resolution of human genome analyses to continue increasing. Similarly, the ability to perform high-resolution human genome analysis has fueled the current and future clinical implementation of such discoveries in the evolving field of genome medicine.

Entities:  

Year:  2009        PMID: 19439022      PMCID: PMC2684663          DOI: 10.1186/gm42

Source DB:  PubMed          Journal:  Genome Med        ISSN: 1756-994X            Impact factor:   11.117


  153 in total

1.  Reciprocal crossovers and a positional preference for strand exchange in recombination events resulting in deletion or duplication of chromosome 17p11.2.

Authors:  Weimin Bi; Sung-Sup Park; Christine J Shaw; Marjorie A Withers; Pragna I Patel; James R Lupski
Journal:  Am J Hum Genet       Date:  2003-11-24       Impact factor: 11.025

2.  Molecular mechanisms for subtelomeric rearrangements associated with the 9q34.3 microdeletion syndrome.

Authors:  Svetlana A Yatsenko; Ellen K Brundage; Erin K Roney; Sau Wai Cheung; A Craig Chinault; James R Lupski
Journal:  Hum Mol Genet       Date:  2009-03-17       Impact factor: 6.150

3.  Genomic structure and expression of the human heme A:farnesyltransferase (COX10) gene.

Authors:  T Murakami; L T Reiter; J R Lupski
Journal:  Genomics       Date:  1997-05-15       Impact factor: 5.736

4.  A chromosome 8 gene-cluster polymorphism with low human beta-defensin 2 gene copy number predisposes to Crohn disease of the colon.

Authors:  Klaus Fellermann; Daniel E Stange; Elke Schaeffeler; Hartmut Schmalzl; Jan Wehkamp; Charles L Bevins; Walter Reinisch; Alexander Teml; Matthias Schwab; Peter Lichter; Bernhard Radlwimmer; Eduard F Stange
Journal:  Am J Hum Genet       Date:  2006-07-12       Impact factor: 11.025

5.  The human COX10 gene is disrupted during homologous recombination between the 24 kb proximal and distal CMT1A-REPs.

Authors:  L T Reiter; T Murakami; T Koeuth; R A Gibbs; J R Lupski
Journal:  Hum Mol Genet       Date:  1997-09       Impact factor: 6.150

6.  Hereditary pancreatitis caused by triplication of the trypsinogen locus.

Authors:  Cédric Le Maréchal; Emmanuelle Masson; Jian-Min Chen; Frédéric Morel; Philippe Ruszniewski; Philippe Levy; Claude Férec
Journal:  Nat Genet       Date:  2006-10-29       Impact factor: 38.330

7.  Rare chromosomal deletions and duplications increase risk of schizophrenia.

Authors: 
Journal:  Nature       Date:  2008-07-30       Impact factor: 49.962

8.  Uniparental disomy as a mechanism for human genetic disease.

Authors:  J E Spence; R G Perciaccante; G M Greig; H F Willard; D H Ledbetter; J F Hejtmancik; M S Pollack; W E O'Brien; A L Beaudet
Journal:  Am J Hum Genet       Date:  1988-02       Impact factor: 11.025

9.  Charcot-Marie-Tooth disease type 1A. Association with a spontaneous point mutation in the PMP22 gene.

Authors:  B B Roa; C A Garcia; U Suter; D A Kulpa; C A Wise; J Mueller; A A Welcher; G J Snipes; E M Shooter; P I Patel; J R Lupski
Journal:  N Engl J Med       Date:  1993-07-08       Impact factor: 91.245

10.  Bacterial artificial chromosome-emulation oligonucleotide arrays for targeted clinical array-comparative genomic hybridization analyses.

Authors:  Zhishuo Ou; Sung-Hae L Kang; Chad A Shaw; Condie E Carmack; Lisa D White; Ankita Patel; Arthur L Beaudet; Sau Wai Cheung; A Craig Chinault
Journal:  Genet Med       Date:  2008-04       Impact factor: 8.822

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  74 in total

1.  The severe end of the spectrum: Hypoplastic left heart in Potocki-Lupski syndrome.

Authors:  Amarilis Sanchez-Valle; Mary Ella Pierpont; Lorraine Potocki
Journal:  Am J Med Genet A       Date:  2011-01-13       Impact factor: 2.802

2.  Frequency of nonallelic homologous recombination is correlated with length of homology: evidence that ectopic synapsis precedes ectopic crossing-over.

Authors:  Pengfei Liu; Melanie Lacaria; Feng Zhang; Marjorie Withers; P J Hastings; James R Lupski
Journal:  Am J Hum Genet       Date:  2011-10-07       Impact factor: 11.025

3.  Detection of clinically relevant exonic copy-number changes by array CGH.

Authors:  Philip M Boone; Carlos A Bacino; Chad A Shaw; Patricia A Eng; Patricia M Hixson; Amber N Pursley; Sung-Hae L Kang; Yaping Yang; Joanna Wiszniewska; Beata A Nowakowska; Daniela del Gaudio; Zhilian Xia; Gayle Simpson-Patel; LaDonna L Immken; James B Gibson; Anne C-H Tsai; Jennifer A Bowers; Tyler E Reimschisel; Christian P Schaaf; Lorraine Potocki; Fernando Scaglia; Tomasz Gambin; Maciej Sykulski; Magdalena Bartnik; Katarzyna Derwinska; Barbara Wisniowiecka-Kowalnik; Seema R Lalani; Frank J Probst; Weimin Bi; Arthur L Beaudet; Ankita Patel; James R Lupski; Sau Wai Cheung; Pawel Stankiewicz
Journal:  Hum Mutat       Date:  2010-11-02       Impact factor: 4.878

4.  Crystal structures of DNA-Whirly complexes and their role in Arabidopsis organelle genome repair.

Authors:  Laurent Cappadocia; Alexandre Maréchal; Jean-Sébastien Parent; Etienne Lepage; Jurgen Sygusch; Normand Brisson
Journal:  Plant Cell       Date:  2010-06-15       Impact factor: 11.277

5.  A multilevel model to address batch effects in copy number estimation using SNP arrays.

Authors:  Robert B Scharpf; Ingo Ruczinski; Benilton Carvalho; Betty Doan; Aravinda Chakravarti; Rafael A Irizarry
Journal:  Biostatistics       Date:  2010-07-12       Impact factor: 5.899

6.  A Likelihood-Based Framework for Association Analysis of Allele-Specific Copy Numbers.

Authors:  Y J Hu; D Y Lin; W Sun; D Zeng
Journal:  J Am Stat Assoc       Date:  2014-10       Impact factor: 5.033

Review 7.  Complex human chromosomal and genomic rearrangements.

Authors:  Feng Zhang; Claudia M B Carvalho; James R Lupski
Journal:  Trends Genet       Date:  2009-06-25       Impact factor: 11.639

8.  Brief report: regression timing and associated features in MECP2 duplication syndrome.

Authors:  S U Peters; R J Hundley; A K Wilson; C M B Carvalho; J R Lupski; M B Ramocki
Journal:  J Autism Dev Disord       Date:  2013-10

Review 9.  Evolution in health and medicine Sackler colloquium: Genomic disorders: a window into human gene and genome evolution.

Authors:  Claudia M B Carvalho; Feng Zhang; James R Lupski
Journal:  Proc Natl Acad Sci U S A       Date:  2010-01-13       Impact factor: 11.205

10.  Clinical genomics and contextualizing genome variation in the diagnostic laboratory.

Authors:  James R Lupski; Pengfei Liu; Pawel Stankiewicz; Claudia M B Carvalho; Jennifer E Posey
Journal:  Expert Rev Mol Diagn       Date:  2020-10-10       Impact factor: 5.225

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