Literature DB >> 19429539

Next-generation DNA sequencing techniques.

Wilhelm J Ansorge1.   

Abstract

Next-generation high-throughput DNA sequencing techniques are opening fascinating opportunities in the life sciences. Novel fields and applications in biology and medicine are becoming a reality, beyond the genomic sequencing which was original development goal and application. Serving as examples are: personal genomics with detailed analysis of individual genome stretches; precise analysis of RNA transcripts for gene expression, surpassing and replacing in several respects analysis by various microarray platforms, for instance in reliable and precise quantification of transcripts and as a tool for identification and analysis of DNA regions interacting with regulatory proteins in functional regulation of gene expression. The next-generation sequencing technologies offer novel and rapid ways for genome-wide characterisation and profiling of mRNAs, small RNAs, transcription factor regions, structure of chromatin and DNA methylation patterns, microbiology and metagenomics. In this article, development of commercial sequencing devices is reviewed and some European contributions to the field are mentioned. Presently commercially available very high-throughput DNA sequencing platforms, as well as techniques under development, are described and their applications in bio-medical fields discussed.

Mesh:

Year:  2009        PMID: 19429539     DOI: 10.1016/j.nbt.2008.12.009

Source DB:  PubMed          Journal:  N Biotechnol        ISSN: 1871-6784            Impact factor:   5.079


  278 in total

1.  DNA sequencing with nanopores.

Authors:  Grégory F Schneider; Cees Dekker
Journal:  Nat Biotechnol       Date:  2012-04-10       Impact factor: 54.908

2.  Comparison of normalization methods for construction of large, multiplex amplicon pools for next-generation sequencing.

Authors:  J Kirk Harris; Jason W Sahl; Todd A Castoe; Brandie D Wagner; David D Pollock; John R Spear
Journal:  Appl Environ Microbiol       Date:  2010-04-23       Impact factor: 4.792

Review 3.  Molecular pathology and patient care.

Authors:  John D Pfeifer
Journal:  Mo Med       Date:  2010 Mar-Apr

Review 4.  Methods in DNA methylation profiling.

Authors:  Tao Zuo; Benjamin Tycko; Ta-Ming Liu; Juey-Jen L Lin; Tim H-M Huang
Journal:  Epigenomics       Date:  2009-12       Impact factor: 4.778

5.  High-resolution typing by integration of genome sequencing data in a large tuberculosis cluster.

Authors:  Anita C Schürch; Kristin Kremer; Olaf Daviena; Albert Kiers; Martin J Boeree; Roland J Siezen; Dick van Soolingen
Journal:  J Clin Microbiol       Date:  2010-06-30       Impact factor: 5.948

6.  Optimus Primer: A PCR enrichment primer design program for next-generation sequencing of human exonic regions.

Authors:  Andrew Mk Brown; Ken Sin Lo; Paul Guelpa; Mélissa Beaudoin; John D Rioux; Jean-Claude Tardif; Michael S Phillips; Guillaume Lettre
Journal:  BMC Res Notes       Date:  2010-07-07

7.  Do we need new antibiotics? The search for new targets and new compounds.

Authors:  Jaroslav Spížek; Jitka Novotná; Tomáš Rezanka; Arnold L Demain
Journal:  J Ind Microbiol Biotechnol       Date:  2010-11-18       Impact factor: 3.346

Review 8.  The next-generation sequencing technology and application.

Authors:  Xiaoguang Zhou; Lufeng Ren; Qingshu Meng; Yuntao Li; Yude Yu; Jun Yu
Journal:  Protein Cell       Date:  2010-07-07       Impact factor: 14.870

9.  Toward single-molecule optical mapping of the epigenome.

Authors:  Michal Levy-Sakin; Assaf Grunwald; Soohong Kim; Natalie R Gassman; Anna Gottfried; Josh Antelman; Younggyu Kim; Sam O Ho; Robin Samuel; Xavier Michalet; Ron R Lin; Thomas Dertinger; Andrew S Kim; Sangyoon Chung; Ryan A Colyer; Elmar Weinhold; Shimon Weiss; Yuval Ebenstein
Journal:  ACS Nano       Date:  2013-12-20       Impact factor: 15.881

10.  Metabolic pathway involved in 2-methyl-6-ethylaniline degradation by Sphingobium sp. strain MEA3-1 and cloning of the novel flavin-dependent monooxygenase system meaBA.

Authors:  Weiliang Dong; Qiongzhen Chen; Ying Hou; Shuhuan Li; Kai Zhuang; Fei Huang; Jie Zhou; Zhoukun Li; Jue Wang; Lei Fu; Zhengguang Zhang; Yan Huang; Fei Wang; Zhongli Cui
Journal:  Appl Environ Microbiol       Date:  2015-09-18       Impact factor: 4.792

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