Literature DB >> 19427484

A chemometric study of chromatograms of tea extracts by correlation optimization warping in conjunction with PCA, support vector machines and random forest data modeling.

L Zheng1, D G Watson, B F Johnston, R L Clark, R Edrada-Ebel, W Elseheri.   

Abstract

A reverse phase high performance liquid chromatography (HPLC) separation was established for profiling water soluble compounds in extracts from tea. Whole chromatograms were pre-processed by techniques including baseline correction, binning and normalisation. In addition, peak alignment by correction of retention time shifts was performed using correlation optimization warping (COW) producing a correlation score of 0.96. To extract the chemically relevant information from the data, a variety of chemometric approaches were employed. Principle component analysis (PCA) was used to group the tea samples according to their chromatographic differences. Three principal components (PCs) described 78% of the total variance after peak alignment (64% before) and analysis of the score and loading plots provided insight into the main chemical differences between the samples. Finally, PCA, support vector machines (SVMs) and random forest (RF) machine learning methods were evaluated comparatively on their ability to predict unknown tea samples using models constructed from a predetermined training set. The best predictions of identity were obtained by using RF.

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Year:  2008        PMID: 19427484     DOI: 10.1016/j.aca.2008.12.015

Source DB:  PubMed          Journal:  Anal Chim Acta        ISSN: 0003-2670            Impact factor:   6.558


  5 in total

Review 1.  The re-emergence of natural products for drug discovery in the genomics era.

Authors:  Alan L Harvey; RuAngelie Edrada-Ebel; Ronald J Quinn
Journal:  Nat Rev Drug Discov       Date:  2015-01-23       Impact factor: 84.694

2.  Tentative identification, quantitation, and principal component analysis of green pu-erh, green, and white teas using UPLC/DAD/MS.

Authors:  Yang Zhao; Pei Chen; Longze Lin; J M Harnly; Liangli Lucy Yu; Zhangwan Li
Journal:  Food Chem       Date:  2011-06-01       Impact factor: 7.514

3.  Rapid Identification of Different Grades of Huangshan Maofeng Tea Using Ultraviolet Spectrum and Color Difference.

Authors:  Danyi Huang; Qinli Qiu; Yinmao Wang; Yu Wang; Yating Lu; Dongmei Fan; Xiaochang Wang
Journal:  Molecules       Date:  2020-10-13       Impact factor: 4.411

4.  Chemotaxonomic Classification of Peucedanum japonicum and Its Chemical Correlation with Peucedanum praeruptorum, Angelica decursiva, and Saposhnikovia divaricata by Liquid Chromatography Combined with Chemometrics.

Authors:  Jung-Hoon Kim; Eui-Jeong Doh; Guemsan Lee
Journal:  Molecules       Date:  2022-03-03       Impact factor: 4.411

5.  Dereplication strategies for targeted isolation of new antitrypanosomal actinosporins A and B from a marine sponge associated-Actinokineospora sp. EG49.

Authors:  Usama Ramadan Abdelmohsen; Cheng Cheng; Christina Viegelmann; Tong Zhang; Tanja Grkovic; Safwat Ahmed; Ronald J Quinn; Ute Hentschel; RuAngelie Edrada-Ebel
Journal:  Mar Drugs       Date:  2014-03-06       Impact factor: 5.118

  5 in total

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