Literature DB >> 19423447

A parameterization-based numerical method for isotropic and anisotropic diffusion smoothing on non-flat surfaces.

Anand A Joshi, David W Shattuck, Paul M Thompson, Richard M Leahy.   

Abstract

Neuroimaging data, such as 3-D maps of cortical thickness or neural activation, can often be analyzed more informatively with respect to the cortical surface rather than the entire volume of the brain. Any cortical surface-based analysis should be carried out using computations in the intrinsic geometry of the surface rather than using the metric of the ambient 3-D space. We present parameterization-based numerical methods for performing isotropic and anisotropic filtering on triangulated surface geometries. In contrast to existing FEM-based methods for triangulated geometries, our approach accounts for the metric of the surface. In order to discretize and numerically compute the isotropic and anisotropic geometric operators, we first parameterize the surface using a p-harmonic mapping. We then use this parameterization as our computational domain and account for the surface metric while carrying out isotropic and anisotropic filtering. To validate our method, we compare our numerical results to the analytical expression for isotropic diffusion on a spherical surface. We apply these methods to smoothing of mean curvature maps on the cortical surface, a step commonly required for analysis of gyrification or for registering surface-based maps across subjects.

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Year:  2009        PMID: 19423447      PMCID: PMC2773135          DOI: 10.1109/TIP.2009.2016163

Source DB:  PubMed          Journal:  IEEE Trans Image Process        ISSN: 1057-7149            Impact factor:   10.856


  19 in total

1.  Magnetic resonance image tissue classification using a partial volume model.

Authors:  D W Shattuck; S R Sandor-Leahy; K A Schaper; D A Rottenberg; R M Leahy
Journal:  Neuroimage       Date:  2001-05       Impact factor: 6.556

2.  Automated graph-based analysis and correction of cortical volume topology.

Authors:  D W Shattuck; R M Leahy
Journal:  IEEE Trans Med Imaging       Date:  2001-11       Impact factor: 10.048

3.  Automated sulcal segmentation using watersheds on the cortical surface.

Authors:  Maryam E Rettmann; Xiao Han; Chenyang Xu; Jerry L Prince
Journal:  Neuroimage       Date:  2002-02       Impact factor: 6.556

4.  Processing textured surfaces via anisotropic geometric diffusion.

Authors:  Ulrich Clarenz; Udo Diewald; Martin Rumpf
Journal:  IEEE Trans Image Process       Date:  2004-02       Impact factor: 10.856

5.  CORTICAL SURFACE PARAMETERIZATION BY P-HARMONIC ENERGY MINIMIZATION.

Authors:  Anand A Joshi; David W Shattuck; Paul M Thompson; Richard M Leahy
Journal:  Proc IEEE Int Symp Biomed Imaging       Date:  2004-04-01

6.  A unified statistical approach for determining significant signals in images of cerebral activation.

Authors:  K J Worsley; S Marrett; P Neelin; A C Vandal; K J Friston; A C Evans
Journal:  Hum Brain Mapp       Date:  1996       Impact factor: 5.038

7.  Detection of fMRI activation using cortical surface mapping.

Authors:  A Andrade; F Kherif; J F Mangin; K J Worsley; A L Paradis; O Simon; S Dehaene; D Le Bihan; J B Poline
Journal:  Hum Brain Mapp       Date:  2001-02       Impact factor: 5.038

8.  Increased local gyrification mapped in Williams syndrome.

Authors:  Christian Gaser; Eileen Luders; Paul M Thompson; Agatha D Lee; Rebecca A Dutton; Jennifer A Geaga; Kiralee M Hayashi; Ursula Bellugi; Albert M Galaburda; Julie R Korenberg; Debra L Mills; Arthur W Toga; Allan L Reiss
Journal:  Neuroimage       Date:  2006-08-09       Impact factor: 6.556

9.  Smoothing and cluster thresholding for cortical surface-based group analysis of fMRI data.

Authors:  Donald J Hagler; Ayse Pinar Saygin; Martin I Sereno
Journal:  Neuroimage       Date:  2006-10-02       Impact factor: 6.556

10.  A surface-based technique for warping three-dimensional images of the brain.

Authors:  P Thompson; A W Toga
Journal:  IEEE Trans Med Imaging       Date:  1996       Impact factor: 10.048

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  9 in total

1.  Heat kernel smoothing using Laplace-Beltrami eigenfunctions.

Authors:  Seongho Seo; Moo K Chung; Houri K Vorperian
Journal:  Med Image Comput Comput Assist Interv       Date:  2010

2.  Using the Anisotropic Laplace Equation to Compute Cortical Thickness.

Authors:  Anand A Joshi; Chitresh Bhushan; Ronald Salloum; Jessica Wisnowski; David W Shattuck; Richard M Leahy
Journal:  Med Image Comput Comput Assist Interv       Date:  2018-09-13

3.  Intracortical smoothing of small-voxel fMRI data can provide increased detection power without spatial resolution losses compared to conventional large-voxel fMRI data.

Authors:  Anna I Blazejewska; Bruce Fischl; Lawrence L Wald; Jonathan R Polimeni
Journal:  Neuroimage       Date:  2019-01-25       Impact factor: 6.556

4.  Unified heat kernel regression for diffusion, kernel smoothing and wavelets on manifolds and its application to mandible growth modeling in CT images.

Authors:  Moo K Chung; Anqi Qiu; Seongho Seo; Houri K Vorperian
Journal:  Med Image Anal       Date:  2015-03-02       Impact factor: 8.545

5.  Static magnetic field controls cell cycle in cultured human glioblastoma cells.

Authors:  Seung Chan Kim; Wooseok Im; Jay Yong Shim; Seung-Ki Kim; Beom Jin Kim
Journal:  Cytotechnology       Date:  2016-04-27       Impact factor: 2.058

6.  Fast Polynomial Approximation of Heat Kernel Convolution on Manifolds and Its Application to Brain Sulcal and Gyral Graph Pattern Analysis.

Authors:  Shih-Gu Huang; Ilwoo Lyu; Anqi Qiu; Moo K Chung
Journal:  IEEE Trans Med Imaging       Date:  2020-01-17       Impact factor: 10.048

7.  Toward reliable characterization of functional homogeneity in the human brain: preprocessing, scan duration, imaging resolution and computational space.

Authors:  Xi-Nian Zuo; Ting Xu; Lili Jiang; Zhi Yang; Xiao-Yan Cao; Yong He; Yu-Feng Zang; F Xavier Castellanos; Michael P Milham
Journal:  Neuroimage       Date:  2012-10-17       Impact factor: 6.556

8.  Effects of non-local diffusion on structural MRI preprocessing and default network mapping: statistical comparisons with isotropic/anisotropic diffusion.

Authors:  Xi-Nian Zuo; Xiu-Xia Xing
Journal:  PLoS One       Date:  2011-10-31       Impact factor: 3.240

9.  Temporal Non-Local Means Filtering Reveals Real-Time Whole-Brain Cortical Interactions in Resting fMRI.

Authors:  Chitresh Bhushan; Minqi Chong; Soyoung Choi; Anand A Joshi; Justin P Haldar; Hanna Damasio; Richard M Leahy
Journal:  PLoS One       Date:  2016-07-08       Impact factor: 3.240

  9 in total

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