| Literature DB >> 19419554 |
Xiu-Feng Zhang1, Ying Zhang, Xiao-Hua Zhang, Su-Mei Zhou, Guan-Gen Yang, Ou-Chen Wang, Gui-Long Guo, Gao-Yi Yang, Xiao-Qu Hu.
Abstract
BACKGROUND: Emerging evidence has demonstrated that Neutrophil gelatinase-associated lipocalin (NGAL) is up-regulated in multiple malignancies, including oesophagus cancer, and plays a critical role in tumorigenesis and progression. However, till now, little is known about the role of NGAL in human rectal cancer. Its association with clinicopathologic characteristics and expression of MMP-9, one of its target genes, has not been reported systematically in rectal cancer. Therefore, to further determine the potential involvement of NGAL in rectal cancer, we have evaluated the expression level of NGAL mRNA by real time RT-PCR, and further elucidated the correlation of NGAL mRNA expression with clinicopathologic features and MMP-9 in rectal cancer.Entities:
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Year: 2009 PMID: 19419554 PMCID: PMC2695474 DOI: 10.1186/1471-2407-9-134
Source DB: PubMed Journal: BMC Cancer ISSN: 1471-2407 Impact factor: 4.430
Primers and probes
| Sequence | |
|---|---|
| Forward primer | 5'-ATGACATGAACCTGCTCGATA-3' |
| Reverse primer | 5'-TCATAGTCGTTCATTATCTTC-3' |
| Probe | 5'-FAM- CCTGAAAAGAGTCTCTGCCCA-TAMRA-3' |
| Forward primer | 5'-CTGAAATGACGTCCCTAAGT-3' |
| Reverse primer | 5'-AGGAGGTCTCACTATCTGGAT-3' |
| Probe | 5'-FAM- TCTGACATGCCTCGAGGACCT-TAMRA-3' |
| Forward primer | 5'-CCTCAAGATCATCAGCAAT-3' |
| Reverse primer | 5'-CCATCCACAGTCTTCTGGGT-3' |
| Probe | 5'-FAM- ACCACAGTCCATGCCATCAC-TAMRA-3' |
Output of randomisation analysis in 2 groups by REST
| GAPDH | NGAL | MMP-9 | |
|---|---|---|---|
| 100 | 100 | 100 | |
| 2 | 2 | 2 | |
| 19.974 | 29.776 | 28.555 | |
| 20.077 | 27.364 | 26.889 | |
| 5.716 | 3.408 | ||
| 0.001 | 0.001 | ||
| 0.931 | 5.322 | 3.173 | |
| 0.709 | 0.001 | 0.001 | |
| 1,000 of 1,000 done | |||
REST: Relative expression software tool.
Sample means: Mean CT values for the rectal cancer tissues.
Control means: Mean CT values for the adjacent normal tissues.
Expression ratios-nn: Expression ratios not normalised.
p values-nn: p values not normalised.
Randomisations: REST (Relative Expression Software Tool) is a standalone software tool to estimate up and down regulation for gene expression study in real-time PCR by using statistical randomization tests, while taking into account issues of reaction efficiency and reference gene normalisation. The randomization scenario is as follows: "if any perceived variation between samples and controls is due only to chance, then we could randomly swap values between the 2 groups and not see any greater difference than what we see between the initial groups."In our study, the hypothesis test performs 1,000 random reallocations of samples and controls between the groups, and counts the number of times the relative expression on the randomly assigned group is greater than the sample data.
Figure 1Output of randomisation analysis in 2 groups by REST. REST:Relative expression software tool. Genes ref.: GAPDH; Genes 1: NGAL; Genes 2: MMP-9 Sample means: Mean CT values for the rectal cancer tissues. Control means:Mean CT values for the adjacent normal tissues. Expression ratios-nn: Expression ratios not normalised. p values-nn: p values not normalised.
Relationship between expression of NGAL mRNA and clinicopathological characteristics in rectal cancer
| Variables/categories | NGAL expression | ||
|---|---|---|---|
| ratio ≤ 1 | ratio > 1 | ||
| 63.38 ± 11.1 | 60.78 ± 13.1 | NS | |
| NS | |||
| Male | 13 | 31 | |
| Female | 18 | 38 | |
| NS | |||
| Well-differentiated | 4 | 3 | |
| Moderately differentiated | 20 | 51 | |
| Poorly differentiated | 7 | 15 | |
| 0.028 | |||
| pT1 | 5 | 2 | |
| pT2 | 13 | 23 | |
| pT3 | 12 | 33 | |
| pT4 | 1 | 11 | |
| 0.009 | |||
| Absent | 17 | 19 | |
| Present | 14 | 50 | |
| 0.023 | |||
| Absent | 26 | 42 | |
| Present | 5 | 27 | |
| 0.011 | |||
| pI | 4 | 2 | |
| pII | 13 | 14 | |
| pIII | 13 | 44 | |
| pIV | 1 | 9 | |
ratio ≤ 1: The expression of NGAL mRNA was not up-regulated; ratio > 1: The expression of NGAL mRNA was up-regulated; NS:Not significant.
Correlation between mRNA up-regulation of NGAL and MMP-9
| MMP-9 expression | NGAL expression | |||
|---|---|---|---|---|
| ratio ≤ 1 | ratio > 1 | |||
| 20 | 17 | < 0.001 | 0.393 | |
| 11 | 52 | |||
ratio ≤ 1: The expression of NGAL or MMP-9 mRNA was not up-regulated; ratio > 1: The expression of NGAL or MMP-9 mRNA was up-regulated; r: Correlation coefficient.