Literature DB >> 19417540

Remarkable evolutionary conservation of SOX14 orthologues.

Jelena Popovic1, Milena Stevanovic.   

Abstract

SOX proteins constitute a large family of diverse, well-conserved transcription factors present in vertebrates and invertebrates, and also implicated in control of many developmental processes. Our objectives have been to identify Sox14 gene of goat (Capra hircus), cow (Bos taurus) and rat (Rattus norvegicus), and to perform comparative analyses and mapping of SOx14 orthologues from numerous vertebrate species. PCR based approach was used to identify Sox14 of goat, cow and rat, while nucleotide and amino acid sequence alignments and mapping were performed using information currently available in public database. Comparative sequence analysis revealed remarkable identity among Sox14 orthologues and helped us to identify highly conserved motifs that represent molecular signatures of SOX14 protein that might have structural or functional significance. Further, determined chromosomal locations of numerous predicted group B Sox genes and their neighbouring genes using currently available genome database. In conclusion, our study has not only supported the proposed model of group B Sox genes evolution in chicken and mammals, but has also revealed that additional evolutionary events split Sox B genes into different chromosomes in some mammals. Mapping data presented in this study could help in refining the understanding of the evolution of group B Sox genes in vertebrates.

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Year:  2009        PMID: 19417540     DOI: 10.1007/s12041-009-0003-4

Source DB:  PubMed          Journal:  J Genet        ISSN: 0022-1333            Impact factor:   1.166


  29 in total

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Authors:  Netta Cohen; Tal Dagan; Lewi Stone; Dan Graur
Journal:  Mol Biol Evol       Date:  2005-02-23       Impact factor: 16.240

2.  Human coding and noncoding DNA: compositional correlations.

Authors:  O Clay; S Cacciò; S Zoubak; D Mouchiroud; G Bernardi
Journal:  Mol Phylogenet Evol       Date:  1996-02       Impact factor: 4.286

3.  Comparative genomic and expression analysis of group B1 sox genes in zebrafish indicates their diversification during vertebrate evolution.

Authors:  Yuich Okuda; Hiroki Yoda; Masanori Uchikawa; Makoto Furutani-Seiki; Hiroyuki Takeda; Hisato Kondoh; Yusuke Kamachi
Journal:  Dev Dyn       Date:  2006-03       Impact factor: 3.780

4.  Nucleotide composition in protein-coding and non-coding DNA in the zygomycete Phycomyces blakesleeanus.

Authors:  Luis M Corrochano; Javier Ruiz-Albert
Journal:  Mycol Res       Date:  2004-08

5.  Comparison of promoter regions of SOX3, SOX14 and SOX18 orthologs in mammals.

Authors:  Natasa Kovacevic-Grujicic; Marija Mojsin; Jelena Djurovic; Isidora Petrovic; Milena Stevanovic
Journal:  DNA Seq       Date:  2008-06

6.  The CTAB-DNA precipitation method: a common mini-scale preparation of template DNA from phagemids, phages or plasmids suitable for sequencing.

Authors:  G Del Sal; G Manfioletti; C Schneider
Journal:  Biotechniques       Date:  1989-05       Impact factor: 1.993

7.  Characterisation and mapping of the human SOX14 gene.

Authors:  N Arsic; T Rajic; S Stanojcic; P N Goodfellow; M Stevanovic
Journal:  Cytogenet Cell Genet       Date:  1998

8.  Genetic analysis of the proximal portion of the mouse t complex: evidence for a second inversion within t haplotypes.

Authors:  B Herrmann; M Bućan; P E Mains; A M Frischauf; L M Silver; H Lehrach
Journal:  Cell       Date:  1986-02-14       Impact factor: 41.582

9.  The cDNA sequence and chromosomal location of the human SOX2 gene.

Authors:  M Stevanovic; O Zuffardi; J Collignon; R Lovell-Badge; P Goodfellow
Journal:  Mamm Genome       Date:  1994-10       Impact factor: 2.957

10.  The isolation and high-resolution chromosomal mapping of human SOX14 and SOX21; two members of the SOX gene family related to SOX1, SOX2, and SOX3.

Authors:  S Malas; S Duthie; P Deloukas; V Episkopou
Journal:  Mamm Genome       Date:  1999-09       Impact factor: 2.957

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  3 in total

1.  Comparative cytogenetic mapping of Sox2 and Sox14 in cichlid fishes and inferences on the genomic organization of both genes in vertebrates.

Authors:  Juliana Mazzuchelli; Fengtang Yang; Thomas D Kocher; Cesar Martins
Journal:  Chromosome Res       Date:  2011-06-21       Impact factor: 5.239

2.  Expression analysis of SOX14 during retinoic acid induced neural differentiation of embryonal carcinoma cells and assessment of the effect of its ectopic expression on SOXB members in HeLa cells.

Authors:  Jelena Popovic; Danijela Stanisavljevic; Marija Schwirtlich; Andrijana Klajn; Jelena Marjanovic; Milena Stevanovic
Journal:  PLoS One       Date:  2014-03-17       Impact factor: 3.240

3.  SOX14 activates the p53 signaling pathway and induces apoptosis in a cervical carcinoma cell line.

Authors:  Danijela Stanisavljevic; Isidora Petrovic; Vladanka Vukovic; Marija Schwirtlich; Marija Gredic; Milena Stevanovic; Jelena Popovic
Journal:  PLoS One       Date:  2017-09-19       Impact factor: 3.240

  3 in total

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