Literature DB >> 19408021

Effects of magnesium salt concentrations on B-DNA overstretching transition.

H Fu1, H Chen, C G Koh, C T Lim.   

Abstract

In this study, we use optical tweezers to investigate the ionic effects of magnesium salt solutions on the overstretching transition of single B-DNA molecules. The experimental data are compared with those in sodium salt solutions. The overstretching transition force increases when the NaCl or MgCl(2) salt concentration increases. Magnesium cations have much stronger effects on the overstretching transition force than sodium cations. For both NaCl and MgCl(2) salt solutions, the overstretching transition force is linear with the natural logarithm of salt concentration, which confirms the theory proposed in previous paper. The modified ZZO model is applied to study the electrostatic contribution of magnesium salt solutions to the overstretching transition of single B-DNA molecules. The consistency between the experimental data and analytical results shows that the modified ZZO model can simulate the transition behavior of single B-DNA molecules in different NaCl and MgCl(2) salt solutions.

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Year:  2009        PMID: 19408021     DOI: 10.1140/epje/i2009-10448-0

Source DB:  PubMed          Journal:  Eur Phys J E Soft Matter        ISSN: 1292-8941            Impact factor:   1.890


  22 in total

1.  Heat capacity effects on the melting of DNA. 2. Analysis of nearest-neighbor base pair effects.

Authors:  I Rouzina; V A Bloomfield
Journal:  Biophys J       Date:  1999-12       Impact factor: 4.033

2.  Effect of pH on the overstretching transition of double-stranded DNA: evidence of force-induced DNA melting.

Authors:  M C Williams; J R Wenner; I Rouzina; V A Bloomfield
Journal:  Biophys J       Date:  2001-02       Impact factor: 4.033

3.  Elastic property of single double-stranded DNA molecules: theoretical study and comparison with experiments.

Authors:  H Zhou; Y Zhang; Z Ou-Yang
Journal:  Phys Rev E Stat Phys Plasmas Fluids Relat Interdiscip Topics       Date:  2000-07

Review 4.  Thermodynamics of DNA interactions from single molecule stretching experiments.

Authors:  Mark C Williams; Ioulia Rouzina; Victor A Bloomfield
Journal:  Acc Chem Res       Date:  2002-03       Impact factor: 22.384

5.  Direct mechanical measurements of the elasticity of single DNA molecules by using magnetic beads.

Authors:  S B Smith; L Finzi; C Bustamante
Journal:  Science       Date:  1992-11-13       Impact factor: 47.728

6.  Near-field-magnetic-tweezer manipulation of single DNA molecules.

Authors:  Jie Yan; Dunja Skoko; John F Marko
Journal:  Phys Rev E Stat Nonlin Soft Matter Phys       Date:  2004-07-12

7.  Ionic effects on overstretching transition of B-DNA.

Authors:  Hongxia Fu; Chan Ghee Koh; Hu Chen
Journal:  Eur Phys J E Soft Matter       Date:  2005-05-27       Impact factor: 1.890

8.  Overstretching B-DNA: the elastic response of individual double-stranded and single-stranded DNA molecules.

Authors:  S B Smith; Y Cui; C Bustamante
Journal:  Science       Date:  1996-02-09       Impact factor: 47.728

9.  Ionic effects on the elasticity of single DNA molecules.

Authors:  C G Baumann; S B Smith; V A Bloomfield; C Bustamante
Journal:  Proc Natl Acad Sci U S A       Date:  1997-06-10       Impact factor: 11.205

10.  1 A crystal structures of B-DNA reveal sequence-specific binding and groove-specific bending of DNA by magnesium and calcium.

Authors:  T K Chiu; R E Dickerson
Journal:  J Mol Biol       Date:  2000-08-25       Impact factor: 5.469

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  3 in total

1.  Two distinct overstretched DNA structures revealed by single-molecule thermodynamics measurements.

Authors:  Xinghua Zhang; Hu Chen; Hongxia Fu; Patrick S Doyle; Jie Yan
Journal:  Proc Natl Acad Sci U S A       Date:  2012-04-24       Impact factor: 11.205

2.  Comparing the Predictions of the Nonlinear Poisson-Boltzmann Equation and the Ion Size-Modified Poisson-Boltzmann Equation for a Low-Dielectric Charged Spherical Cavity in an Aqueous Salt Solution.

Authors:  Alexander R J Silalahi; Alexander H Boschitsch; Robert C Harris; Marcia O Fenley
Journal:  J Chem Theory Comput       Date:  2010-11-19       Impact factor: 6.006

3.  Characterizing the interaction between DNA and GelRed fluorescent stain.

Authors:  F A P Crisafuli; E B Ramos; M S Rocha
Journal:  Eur Biophys J       Date:  2014-11-13       Impact factor: 1.733

  3 in total

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