| Literature DB >> 19404486 |
Bin Li1, Hai-Qing Zhang, Yu Shi, Yun-Bing Min, Shao-Fen Lin, Kai-Li Wu, Jie Hu, Shi-Bo Tang.
Abstract
PURPOSE: We performed human, animal, and in vitro studies to examine the potential role of nuclear transport factor 2 (NTF2) in conferring resistance to diabetic retinopathy (DR).Entities:
Mesh:
Substances:
Year: 2009 PMID: 19404486 PMCID: PMC2674309
Source DB: PubMed Journal: Mol Vis ISSN: 1090-0535 Impact factor: 2.367
Summary of significant differential gene expression as determined by microarray analysis.
| 213726_x_at | nf66f09.s1 NCI_CGAP_Co3 Homo sapiens cDNA clone IMAGE:924905 3′ similar to gb:X79535 tubulin beta-2 chain (human); mRNA sequence. | 0.00988 |
| 209458_x_at | hemoglobin, alpha 2 | 0.00985 |
| 206208_at | carbonic anhydrase IV | 0.00981 |
| 1558459_s_at | MRNA; cDNA DKFZp686D21117 (from clone DKFZp686D21117) | 0.00923 |
| 201230_s_at | ariadne homolog 2 (Drosophila) | 0.00895 |
| 226975_at | hypothetical protein FLJ25070 | 0.00895 |
| 1553588_at | NADH dehydrogenase, subunit 3 (complex I); go_component: mitochondrial inner membrane [goid 0005743] [evidence P] [pmid 9878551]; go_component: respiratory chain complex I (sensu Eukarya) [goid 0005747] [evidence NAS]; go_component: mitochondrion [goid 0005739] [evidence IEA]; go_function: NADH dehydrogenase (ubiquinone) activity [goid 0008137] [evidence NAS] [pmid 9878551]; go_function: oxidoreductase activity [goid 0016491] [evidence IEA]; go_process: mitochondrial electron transport, NADH to ubiquinone [goid 0006120] [evidence NAS] [pmid 9878551]; Homo sapiens NADH dehydrogenase 3 (MTND3), mRNA. | 0.00892 |
| 226434_at | hypothetical protein MGC22793 | 0.0084 |
| 201788_at | DEAD (Asp-Glu-Ala-Asp) box polypeptide 42 | 0.00824 |
| 223440_at | lin-10 protein homolog | 0.00802 |
| 243954_at | Hypothetical protein LOC285286 (LOC285286), mRNA | 0.00781 |
| 205844_at | vanin 1 | 0.00673 |
| 228460_at | zinc finger protein 319 | 0.00671 |
| 236012_at | proteasome (prosome, macropain) inhibitor subunit 1 (PI31) | 0.00663 |
| 233690_at | CDNA: FLJ23090 fis, clone LNG07119 | 0.00576 |
| 202397_at | nuclear transport factor 2 | 0.00542 |
| 224776_at | putative lysophosphatidic acid acyltransferase | 0.00529 |
| 201378_s_at | NICE-4 protein | 0.00515 |
| 223365_at | DEAH (Asp-Glu-Ala-His) box polypeptide 37 | 0.00469 |
| 217232_x_at | Homo sapiens mutant beta-globin (HBB) gene, complete cds | 0.00402 |
| 211745_x_at | hemoglobin, alpha 2 | 0.00385 |
| 219226_at | CDC2-related protein kinase 7 | 0.00286 |
| 225819_at | transforming growth factor beta regulator 1 | 0.000514 |
Quantitative real time PCR evaluation of NTF2 gene expression.
| AGCTTAAGGCGGATGAAGACC | 58 | |
| GAGGAGGAAACAGCGTGAGTG | ||
| CTTTTAGGATGGCAAGGGACT | 58 | |
| TGGAACGGTGAAGGTGACA |
Cloning and sequencing of the rat NTF2 gene.
| GGAATTCATGGGAGACAAGCCAATTG | 56 | |
| GGAATTCTCAGCCGAAGTTGTGC |
The RNAi NTF2 sequence.
| Sense | GATCCAAGCCAATTTGGGAGCAGATTTTCAAGAGAAATCTGCTCCCAAATTGGCTTTTTTTTACGCGTG |
| Antisense | ATTCACGCGTAAAAAAAAGCCAATTTGGGAGCAGATTTCTCTTGAAAATCTGCTCCCAAATTGGCTTG |
Quantitative real time PCR evaluation of NTF2 AND VEGF expression.
| AAAGAACATCAATGACGCTTGG | 57 | |
| GGAGCATCTGGAGGAGATAGGA | ||
| CTGGGTATGGAATCCTGTGG | 58 | |
| TCATCGTACTCCTGCTTGCTG | ||
| TCTTCAAGCCGTCCTGTGTG | 58 | |
| ACAGTGAACGCTCCAGGATTTA |
Figure 1NTF2 expression was significantly lower in patients with PDR. Expression of NTF2 mRNA as determined by real-time PCR in patients with type 2 diabetes mellitus (DM) and proliferative diabetic retinopathy (PDR, group P), DM without PDR (group N) and healthy volunteers (group NO). Asterisk indicates significance between groups difference (p<0.05).
Figure 2Retinal sections from diabetic rats infused with fluorescein isothiocyanate. Representative images from rAAV2-infected rats was shown on A and B. Representative images from rAAV2-NTF2-infected rats were shown on C and D. Decreased blood vessel leakage was apparent in retinas from group B rats (NTF2 overexpression). Scale bar=50 μm for A and C, 100 μm for B and D.
Figure 3Effects of NTF2 levels on NTF2 and VEGF mRNA expression. Overexpression of NTF2 by transfection of rAAV2-NTF2 increased the expression level of NTF2 but reduced the expression of VEGF (A, B). Downregulation of NTF2 by transfection with pSIREN-NTF2 siRNA reduced NTF2 expression but increased VEGF expression (C, D). The experiments were performed in rat retinal capillary endothelial cells. Asterisk (*) indicates a significant difference between groups (p<0.05).
Figure 4Effects of NTF2 expression on NTF2 and VEGF protein levels. Overexpression of NTF2 by transfection with rAAV2-NTF2 increased NTF2 protein expression but reduced VEGF protein level (B, D). Downregulation of NTF2 by transfection with pSIREN-NTF2 siRNA inhibited NTF2 protein expression but increased VEGF protein level (F, H). The experiments were performed in rat retinal capillary endothelial cells. Representative western blots were shown for the effects of NTF2 overexpression and downregulation on NTF2 (A, E) and VEGF (C, G) preotein expression. Asterisk (*) indicates a significant difference between the groups (p<0.05).