Literature DB >> 19404464

Tying new knots in synthetic biology.

David K Karig1, Michael L Simpson.   

Abstract

Recent years have seen the emergence of synthetic biology, which encompasses the engineering of living organisms as well as the implementation of biological behavior in non-living substrates. Many of these engineered systems have harnessed the diverse toolkit of proteins, genes, and cellular processes that nature offers. While these efforts have been fruitful, they have also illustrated the difficulty associated with programming highly complex functions by tapping into cellular processes. Another set of efforts has focused on building circuits, performing computation, and constructing nanoscale machines using nucleic acids. Zhang et al., 2007, Science 318, 1121-1125 and Yin et al., 2008, Nature 451, 318-322 recently demonstrated flexible approaches for the modular construction of such biochemical devices exclusively using DNA. These approaches have exciting implications both for engineering living cells and for mimicking life-like behavior at the nanoscale.

Year:  2008        PMID: 19404464      PMCID: PMC2645563          DOI: 10.2976/1.2907240

Source DB:  PubMed          Journal:  HFSP J        ISSN: 1955-205X


  32 in total

1.  Construction of a genetic toggle switch in Escherichia coli.

Authors:  T S Gardner; C R Cantor; J J Collins
Journal:  Nature       Date:  2000-01-20       Impact factor: 49.962

Review 2.  Reconstruction of genetic circuits.

Authors:  David Sprinzak; Michael B Elowitz
Journal:  Nature       Date:  2005-11-24       Impact factor: 49.962

3.  Enzyme-free nucleic acid logic circuits.

Authors:  Georg Seelig; David Soloveichik; David Yu Zhang; Erik Winfree
Journal:  Science       Date:  2006-12-08       Impact factor: 47.728

4.  Programming biomolecular self-assembly pathways.

Authors:  Peng Yin; Harry M T Choi; Colby R Calvert; Niles A Pierce
Journal:  Nature       Date:  2008-01-17       Impact factor: 49.962

5.  Ecology and habitats of extremophiles.

Authors:  J K Kristjánsson; G O Hreggvidsson
Journal:  World J Microbiol Biotechnol       Date:  1995-01       Impact factor: 3.312

6.  Molecular computation of solutions to combinatorial problems.

Authors:  L M Adleman
Journal:  Science       Date:  1994-11-11       Impact factor: 47.728

7.  Characterization of true-branching cyanobacteria from geothermal sites and hot springs of Costa Rica.

Authors:  Karin Finsinger; Ingeborg Scholz; Aurelio Serrano; Saylen Morales; Lorena Uribe-Lorio; Marielos Mora; Ana Sittenfeld; Jürgen Weckesser; Wolfgang R Hess
Journal:  Environ Microbiol       Date:  2007-12-17       Impact factor: 5.491

8.  Complete chemical synthesis, assembly, and cloning of a Mycoplasma genitalium genome.

Authors:  Daniel G Gibson; Gwynedd A Benders; Cynthia Andrews-Pfannkoch; Evgeniya A Denisova; Holly Baden-Tillson; Jayshree Zaveri; Timothy B Stockwell; Anushka Brownley; David W Thomas; Mikkel A Algire; Chuck Merryman; Lei Young; Vladimir N Noskov; John I Glass; J Craig Venter; Clyde A Hutchison; Hamilton O Smith
Journal:  Science       Date:  2008-01-24       Impact factor: 47.728

9.  Cell-free synthetic biology: a bottom-up approach to discovery by design.

Authors:  Michael L Simpson
Journal:  Mol Syst Biol       Date:  2006-12-12       Impact factor: 11.429

10.  Construction of an in vitro bistable circuit from synthetic transcriptional switches.

Authors:  Jongmin Kim; Kristin S White; Erik Winfree
Journal:  Mol Syst Biol       Date:  2006-12-12       Impact factor: 11.429

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  2 in total

1.  Model for biological communication in a nanofabricated cell-mimic driven by stochastic resonance.

Authors:  David K Karig; Piro Siuti; Roy D Dar; Scott T Retterer; Mitchel J Doktycz; Michael L Simpson
Journal:  Nano Commun Netw       Date:  2011-03       Impact factor: 2.947

2.  Expression optimization and synthetic gene networks in cell-free systems.

Authors:  David K Karig; Sukanya Iyer; Michael L Simpson; Mitchel J Doktycz
Journal:  Nucleic Acids Res       Date:  2011-12-17       Impact factor: 16.971

  2 in total

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