Literature DB >> 19404414

The subtle benefits of being promiscuous: adaptive evolution potentiated by enzyme promiscuity.

Mark A Depristo1.   

Abstract

In this commentary we discuss recent progress in our understanding of adaptive protein evolution. We begin with a general introduction to proteins and their evolution, quickly focusing on the question of how natural selection produces proteins with novel functions. We then summarize the theory of latent protein adaptation advanced by the joint articles by Amitai et al. (2007), HFSP J. 1, 67-78 and Wroe et al. (2007) HFSP J. 1, 79-87, published in the first issue edition of the HFSP Journal. This theory provides a biophysical framework linking the effects of individual mutations on promiscuous protein function, neutral genetic drift, and gene duplication to the process of adaptive protein evolution.

Entities:  

Year:  2007        PMID: 19404414      PMCID: PMC2639842          DOI: 10.2976/1.2754665

Source DB:  PubMed          Journal:  HFSP J        ISSN: 1955-205X


  38 in total

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6.  A structural model of latent evolutionary potentials underlying neutral networks in proteins.

Authors:  Richard Wroe; Hue Sun Chan; Erich Bornberg-Bauer
Journal:  HFSP J       Date:  2007-05-21

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Review 8.  HIV chemotherapy.

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10.  Evolution of hormone-receptor complexity by molecular exploitation.

Authors:  Jamie T Bridgham; Sean M Carroll; Joseph W Thornton
Journal:  Science       Date:  2006-04-07       Impact factor: 47.728

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  12 in total

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5.  Protein dynamics and the diversity of an antibody response.

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6.  Evidence that Environmental Heterogeneity Maintains a Detoxifying Enzyme Polymorphism in Drosophila melanogaster.

Authors:  Mahul Chakraborty; James D Fry
Journal:  Curr Biol       Date:  2015-12-31       Impact factor: 10.834

7.  Applying neutral drift to the directed molecular evolution of a β-glucuronidase into a β-galactosidase: Two different evolutionary pathways lead to the same variant.

Authors:  Wendy S Smith; Jennifer R Hale; Cameron Neylon
Journal:  BMC Res Notes       Date:  2011-05-06

8.  A measure of the promiscuity of proteins and characteristics of residues in the vicinity of the catalytic site that regulate promiscuity.

Authors:  Sandeep Chakraborty; Basuthkar J Rao
Journal:  PLoS One       Date:  2012-02-16       Impact factor: 3.240

9.  An automated flow for directed evolution based on detection of promiscuous scaffolds using spatial and electrostatic properties of catalytic residues.

Authors:  Sandeep Chakraborty
Journal:  PLoS One       Date:  2012-07-11       Impact factor: 3.240

10.  Evolutionary Rate Heterogeneity of Primary and Secondary Metabolic Pathway Genes in Arabidopsis thaliana.

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Journal:  Genome Biol Evol       Date:  2015-11-10       Impact factor: 3.416

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