Literature DB >> 19403772

Use of reverse transcriptase PCR to subtype N1 to N9 neuraminidase genes of avian influenza viruses.

Kenji Tsukamoto1, Takayoshi Ashizawa, Koji Nakanishi, Noriyuki Kaji, Kotaro Suzuki, Makiko Shishido, Masatoshi Okamatsu, Masaji Mase.   

Abstract

Reverse transcriptase PCR designed to amplify the N1 to N9 neuraminidase (NA) genes of avian influenza viruses detected 118 of the 119 NA genes tested (99.2%) in a subtype-specific manner. This technique successfully subtyped all 167 recent avian influenza viruses isolated from birds. Subtype specificity was confirmed by sequence analyses of all 285 PCR products.

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Year:  2009        PMID： 19403772      PMCID： PMC2708491          DOI： 10.1128/JCM.02366-08

Source DB:  PubMed          Journal:  J Clin Microbiol        ISSN： 0095-1137            Impact factor:   5.948


  12 in total

1.  Summary of avian influenza activity in Europe, Asia, Africa, and Australasia, 2002-2006.

Authors:  Dennis J Alexander
Journal:  Avian Dis       Date:  2007-03       Impact factor: 1.577

2.  Subtyping of avian influenza viruses H1 to H15 on the basis of hemagglutinin genes by PCR assay and molecular determination of pathogenic potential.

Authors:  Kenji Tsukamoto; Hisayoshi Ashizawa; Koji Nakanishi; Noriyuki Kaji; Kotaro Suzuki; Masatoshi Okamatsu; Shigeo Yamaguchi; Masaji Mase
Journal:  J Clin Microbiol       Date:  2008-07-02       Impact factor: 5.948

3.  Typing and subtyping influenza virus using DNA microarrays and multiplex reverse transcriptase PCR.

Authors:  J Li; S Chen; D H Evans
Journal:  J Clin Microbiol       Date:  2001-02       Impact factor: 5.948

4.  Simultaneous genotyping of all hemagglutinin and neuraminidase subtypes of avian influenza viruses by use of padlock probes.

Authors:  Péter Gyarmati; Tim Conze; Siamak Zohari; Neil LeBlanc; Mats Nilsson; Ulf Landegren; Johan Banér; Sándor Belák
Journal:  J Clin Microbiol       Date:  2008-03-19       Impact factor: 5.948

5.  Use of the DNA flow-thru chip, a three-dimensional biochip, for typing and subtyping of influenza viruses.

Authors:  Nicole Kessler; Olivier Ferraris; Kevin Palmer; Wayne Marsh; Adam Steel
Journal:  J Clin Microbiol       Date:  2004-05       Impact factor: 5.948

6.  Rapid molecular subtyping by reverse transcription polymerase chain reaction of the neuraminidase gene of avian influenza A viruses.

Authors:  S R Fereidouni; E Starick; C Grund; A Globig; T C Mettenleiter; M Beer; T Harder
Journal:  Vet Microbiol       Date:  2008-10-08       Impact factor: 3.293

7.  Experimental infection of swans and geese with highly pathogenic avian influenza virus (H5N1) of Asian lineage.

Authors:  Justin D Brown; David E Stallknecht; David E Swayne
Journal:  Emerg Infect Dis       Date:  2008-01       Impact factor: 6.883

8.  H5N1 outbreaks and enzootic influenza.

Authors:  Robert G Webster; Malik Peiris; Honglin Chen; Yi Guan
Journal:  Emerg Infect Dis       Date:  2006-01       Impact factor: 6.883

9.  Susceptibility of North American ducks and gulls to H5N1 highly pathogenic avian influenza viruses.

Authors:  Justin D Brown; David E Stallknecht; Joan R Beck; David L Suarez; David E Swayne
Journal:  Emerg Infect Dis       Date:  2006-11       Impact factor: 6.883

10.  A broad spectrum, one-step reverse-transcription PCR amplification of the neuraminidase gene from multiple subtypes of influenza A virus.

Authors:  Alejandra Castillo Alvarez; Marion E G Brunck; Victoria Boyd; Richard Lai; Elena Virtue; Wenbin Chen; Cheryl Bletchly; Hans G Heine; Ross Barnard
Journal:  Virol J       Date:  2008-07-09       Impact factor: 4.099
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  22 in total

1.  Broad detection of diverse H5 and H7 hemagglutinin genes of avian influenza viruses by real-time reverse transcription-PCR using primer and probe sets containing mixed bases.

Authors:  Kenji Tsukamoto; Daigo Noguchi; Koutaro Suzuki; Makiko Shishido; Takayoshi Ashizawa; Min-Chul Kim; Youn-Jeong Lee; Tatsuya Tada
Journal:  J Clin Microbiol       Date:  2010-09-22       Impact factor: 5.948

2.  Genetic characterization of influenza A virus subtype H7N1 isolated from quail, Thailand.

Authors:  Manoosak Wongphatcharachai; Trong Wisedchanwet; Nutthawan Nonthabenjawan; Waleemas Jairak; Supassama Chaiyawong; Napawan Bunpapong; Alongkorn Amonsin
Journal:  Virus Genes       Date:  2014-09-28       Impact factor: 2.332

3.  Subpopulation Primers Essential for Exhaustive Detection of Diverse Hemagglutinin Genes of H5 Subtype Avian Influenza Viruses by Loop-Mediated Isothermal Amplification Method.

Authors:  Y Furuyama; Y Takahashi; K Noguchi; H Murakami; M Sakaguchi; Shin Hisamatsu; T Usui; T Yamaguchi; T Ito; K Tsukamoto
Journal:  J Clin Microbiol       Date:  2018-08-27       Impact factor: 5.948

4.  SYBR green-based real-time reverse transcription-PCR for typing and subtyping of all hemagglutinin and neuraminidase genes of avian influenza viruses and comparison to standard serological subtyping tests.

Authors:  Kenji Tsukamoto; Carlos Javier Panei; Panei Carlos Javier; Makiko Shishido; Daigo Noguchi; John Pearce; Hyun-Mi Kang; Ok Mi Jeong; Youn-Jeong Lee; Koji Nakanishi; Takayoshi Ashizawa
Journal:  J Clin Microbiol       Date:  2011-10-26       Impact factor: 5.948

5.  Genetic characterization of canine influenza A virus (H3N2) in Thailand.

Authors:  Napawan Bunpapong; Nutthawan Nonthabenjawan; Supassama Chaiwong; Ratanaporn Tangwangvivat; Supanat Boonyapisitsopa; Waleemas Jairak; Ranida Tuanudom; Duangduean Prakairungnamthip; Sanipa Suradhat; Roongroje Thanawongnuwech; Alongkorn Amonsin
Journal:  Virus Genes       Date:  2013-10-08       Impact factor: 2.332

6.  Emergence and genetic variation of neuraminidase stalk deletions in avian influenza viruses.

Authors:  Jinling Li; Heinrich Zu Dohna; Carol J Cardona; Joy Miller; Tim E Carpenter
Journal:  PLoS One       Date:  2011-02-23       Impact factor: 3.240

7.  Genetic characterization of avian influenza subtype H4N6 and H4N9 from live bird market, Thailand.

Authors:  Trong Wisedchanwet; Manoosak Wongphatcharachai; Supanat Boonyapisitsopa; Napawan Bunpapong; Pravina Kitikoon; Alongkorn Amonsin
Journal:  Virol J       Date:  2011-03-21       Impact factor: 4.099

8.  Pathogenicity of Highly Pathogenic Avian Influenza Virus H5N1 in Naturally Infected Poultry in Egypt.

Authors:  Ibrahim Thabet Hagag; Shimaa M G Mansour; Zerui Zhang; Ahmed A H Ali; El-Bakry M Ismaiel; Ali A Salama; Carol J Cardona; James Collins; Zheng Xing
Journal:  PLoS One       Date:  2015-05-11       Impact factor: 3.240

9.  Neuraminidase subtyping of avian influenza viruses with PrimerHunter-designed primers and quadruplicate primer pools.

Authors:  Yanyan Huang; Mazhar I Khan; Mazhar Khan; Ion Măndoiu; Ion I Măndoiu
Journal:  PLoS One       Date:  2013-11-29       Impact factor: 3.240

10.  Avian influenza surveillance reveals presence of low pathogenic avian influenza viruses in poultry during 2009-2011 in the West Bengal State, India.

Authors:  Shailesh D Pawar; Sandeep D Kale; Amol S Rawankar; Santosh S Koratkar; Chandrashekhar G Raut; Satish A Pande; Jayati Mullick; Akhilesh C Mishra
Journal:  Virol J       Date:  2012-08-07       Impact factor: 4.099
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