Literature DB >> 19396851

Artificial restriction DNA cutters as new tools for gene manipulation.

Hitoshi Katada1, Makoto Komiyama.   

Abstract

The final cut. Two types of artificial tools (artificial restriction DNA cutter and zinc finger nuclease) that cut double-stranded DNA through hydrolysis of target phosphodiester linkages, have been recently developed. The chemical structures, preparation, properties, and typical applications of these two man-made tools are reviewed.Two types of artificial tools that cut double-stranded DNA through hydrolysis of target phosphodiester linkages have been recently developed. One is the chemistry-based artificial restriction DNA cutter (ARCUT) that is composed of a Ce(IV)-EDTA complex, which catalyses DNA hydrolysis, and a pair of pseudo-complementary peptide nucleic acid fragments for sequence recognition. Another type of DNA cutter, zinc finger nuclease (ZFN), is composed of the nuclease domain of naturally occurring FokI restriction endonuclease and a designed zinc finger DNA-binding domain. For both of these artificial tools, the scission site and specificity can be freely chosen according to our needs, so that even huge genomic DNA sequences can be selectively cut at the target site. In this article, the chemical structures, preparation, properties, and typical applications of these two man-made tools are described.

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Year:  2009        PMID: 19396851     DOI: 10.1002/cbic.200900040

Source DB:  PubMed          Journal:  Chembiochem        ISSN: 1439-4227            Impact factor:   3.164


  9 in total

1.  Light-activated gene editing with a photocaged zinc-finger nuclease.

Authors:  Chungjung Chou; Alexander Deiters
Journal:  Angew Chem Int Ed Engl       Date:  2011-06-10       Impact factor: 15.336

2.  A novel pseudo-complementary PNA G-C base pair.

Authors:  Anne G Olsen; Otto Dahl; Asger B Petersen; John Nielsen; Peter E Nielsen
Journal:  Artif DNA PNA XNA       Date:  2011-01

Review 3.  Chemical modifications of artificial restriction DNA cutter (ARCUT) to promote its in vivo and in vitro applications.

Authors:  Makoto Komiyama
Journal:  Artif DNA PNA XNA       Date:  2014-12-15

Review 4.  Natural and engineered nicking endonucleases--from cleavage mechanism to engineering of strand-specificity.

Authors:  Siu-Hong Chan; Barry L Stoddard; Shuang-Yong Xu
Journal:  Nucleic Acids Res       Date:  2010-08-30       Impact factor: 16.971

Review 5.  An update on targeted gene repair in mammalian cells: methods and mechanisms.

Authors:  Nanna M Jensen; Trine Dalsgaard; Maria Jakobsen; Roni R Nielsen; Charlotte B Sørensen; Lars Bolund; Thomas G Jensen
Journal:  J Biomed Sci       Date:  2011-02-02       Impact factor: 8.410

6.  Chemical and biological approaches to improve the efficiency of homologous recombination in human cells mediated by artificial restriction DNA cutter.

Authors:  Hitoshi Katada; Toshimasa Harumoto; Narumi Shigi; Makoto Komiyama
Journal:  Nucleic Acids Res       Date:  2012-02-23       Impact factor: 16.971

Review 7.  Applications of PNA-Based Artificial Restriction DNA Cutters.

Authors:  Narumi Shigi; Jun Sumaoka; Makoto Komiyama
Journal:  Molecules       Date:  2017-09-21       Impact factor: 4.411

8.  Cut-and-Paste of DNA Using an Artificial Restriction DNA Cutter.

Authors:  Makoto Komiyama
Journal:  Int J Mol Sci       Date:  2013-02-05       Impact factor: 5.923

Review 9.  Phosphodiester models for cleavage of nucleic acids.

Authors:  Satu Mikkola; Tuomas Lönnberg; Harri Lönnberg
Journal:  Beilstein J Org Chem       Date:  2018-04-10       Impact factor: 2.883

  9 in total

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