Literature DB >> 19392023

Enhanced stochastic oscillations in autocatalytic reactions.

Thierry Dauxois1, Francesca Di Patti, Duccio Fanelli, Alan J McKane.   

Abstract

We study a simplified scheme of k coupled autocatalytic reactions, previously introduced by Togashi and Kaneko. The role of stochastic fluctuations is elucidated through the use of the van Kampen system-size expansion and the results compared with direct stochastic simulations. Regular temporal oscillations are predicted to occur for the concentration of the various chemical constituents, with an enhanced amplitude resulting from a resonance which is induced by the intrinsic graininess of the system. The associated power spectra are determined and have a different form depending on the number of chemical constituents k . We make detailed comparisons in the two cases k=4 and k=8 . Agreement between the theoretical and numerical results for the power spectrum is good in both cases. The resulting spectrum is especially interesting in the k=8 system, since it has two peaks, which the system-size expansion is still able to reproduce accurately.

Year:  2009        PMID: 19392023     DOI: 10.1103/PhysRevE.79.036112

Source DB:  PubMed          Journal:  Phys Rev E Stat Nonlin Soft Matter Phys        ISSN: 1539-3755


  5 in total

Review 1.  Bacterial growth: a statistical physicist's guide.

Authors:  Rosalind J Allen; Bartlomiej Waclaw
Journal:  Rep Prog Phys       Date:  2018-10-01

2.  The stochastic evolution of a protocell: the Gillespie algorithm in a dynamically varying volume.

Authors:  T Carletti; A Filisetti
Journal:  Comput Math Methods Med       Date:  2012-03-07       Impact factor: 2.238

3.  Graph-facilitated resonant mode counting in stochastic interaction networks.

Authors:  Michael F Adamer; Thomas E Woolley; Heather A Harrington
Journal:  J R Soc Interface       Date:  2017-12       Impact factor: 4.118

4.  Frequency spectrum of chemical fluctuation: A probe of reaction mechanism and dynamics.

Authors:  Sanggeun Song; Gil-Suk Yang; Seong Jun Park; Sungguan Hong; Ji-Hyun Kim; Jaeyoung Sung
Journal:  PLoS Comput Biol       Date:  2019-09-16       Impact factor: 4.475

5.  Coloured Noise from Stochastic Inflows in Reaction-Diffusion Systems.

Authors:  Michael F Adamer; Heather A Harrington; Eamonn A Gaffney; Thomas E Woolley
Journal:  Bull Math Biol       Date:  2020-03-20       Impact factor: 1.758

  5 in total

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