Literature DB >> 19391975

Stochasticity of gene products from transcriptional pulsing.

Srividya Iyer-Biswas1, F Hayot, C Jayaprakash.   

Abstract

Transcriptional pulsing has been observed in both prokaryotes and eukaryotes and plays a crucial role in cell-to-cell variability of protein and mRNA numbers. An important issue is how the time constants associated with episodes of transcriptional bursting and mRNA and protein degradation rates lead to different cellular mRNA and protein distributions, starting from the transient regime leading to the steady state. We address this by deriving and then investigating the exact time-dependent solution of the master equation for a transcriptional pulsing model of mRNA distributions. We find a plethora of results. We show that, among others, bimodal and long-tailed (power-law) distributions occur in the steady state as the rate constants are varied over biologically significant time scales. Since steady state may not be reached experimentally we present results for the time evolution of the distributions. Because cellular behavior is determined by proteins, we also investigate the effect of the different mRNA distributions on the corresponding protein distributions using numerical simulations.

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Year:  2009        PMID: 19391975     DOI: 10.1103/PhysRevE.79.031911

Source DB:  PubMed          Journal:  Phys Rev E Stat Nonlin Soft Matter Phys        ISSN: 1539-3755


  48 in total

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4.  Simulations of stochastic biological phenomena.

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5.  Gene Networks with Transcriptional Bursting Recapitulate Rare Transient Coordinated High Expression States in Cancer.

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6.  Exact and approximate distributions of protein and mRNA levels in the low-copy regime of gene expression.

Authors:  Pavol Bokes; John R King; Andrew T A Wood; Matthew Loose
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7.  Transcription stochasticity of complex gene regulation models.

Authors:  Anne Schwabe; Katja N Rybakova; Frank J Bruggeman
Journal:  Biophys J       Date:  2012-09-19       Impact factor: 4.033

8.  Energetic costs of cellular computation.

Authors:  Pankaj Mehta; David J Schwab
Journal:  Proc Natl Acad Sci U S A       Date:  2012-10-08       Impact factor: 11.205

9.  Spectral solutions to stochastic models of gene expression with bursts and regulation.

Authors:  Andrew Mugler; Aleksandra M Walczak; Chris H Wiggins
Journal:  Phys Rev E Stat Nonlin Soft Matter Phys       Date:  2009-10-20

10.  HIV promoter integration site primarily modulates transcriptional burst size rather than frequency.

Authors:  Ron Skupsky; John C Burnett; Jonathan E Foley; David V Schaffer; Adam P Arkin
Journal:  PLoS Comput Biol       Date:  2010-09-30       Impact factor: 4.475

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