Literature DB >> 19390156

ALINE: a WYSIWYG protein-sequence alignment editor for publication-quality alignments.

Charles Simon Bond1, Alexander Wolfgang Schüttelkopf.   

Abstract

Marked-up sequence alignments typically provide the central figure in articles describing proteins, whether in the fields of biochemistry, bioinformatics or structural biology. The generation of these figures is often unwieldy: interactive programs are often aesthetically limited and the use of batch programs requires the repetitive iterative editing of scripts. ALINE is a portable interactive graphical sequence-alignment editor implemented in Perl/Tk which produces publication-quality sequence-alignment figures where "what you see is what you get". ALINE is freely available for download from http://crystal.bcs.uwa.edu.au/px/charlie/software/aline/.

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Year:  2009        PMID： 19390156     DOI： 10.1107/S0907444909007835

Source DB:  PubMed          Journal:  Acta Crystallogr D Biol Crystallogr        ISSN： 0907-4449


  225 in total

1.  Noncanonical tandem SH2 enables interaction of elongation factor Spt6 with RNA polymerase II.

Authors:  Marie-Laure Diebold; Erin Loeliger; Michael Koch; Fred Winston; Jean Cavarelli; Christophe Romier
Journal:  J Biol Chem       Date:  2010-10-06       Impact factor: 5.157

2.  Crystallization and preliminary crystallographic characterization of the N-terminal Kunitz domain of boophilin.

Authors:  Tatiana B Cereija; Ana C Figueiredo; Daniele de Sanctis; Aparecida S Tanaka; Pedro José Barbosa Pereira
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2012-03-27

3.  TFIID TAF6-TAF9 complex formation involves the HEAT repeat-containing C-terminal domain of TAF6 and is modulated by TAF5 protein.

Authors:  Elisabeth Scheer; Frédéric Delbac; Laszlo Tora; Dino Moras; Christophe Romier
Journal:  J Biol Chem       Date:  2012-06-13       Impact factor: 5.157

4.  Crystal structure of the zinc-, cobalt-, and iron-containing adenylate kinase from Desulfovibrio gigas: a novel metal-containing adenylate kinase from Gram-negative bacteria.

Authors:  A Mukhopadhyay; A V Kladova; S A Bursakov; O Yu Gavel; J J Calvete; V L Shnyrov; I Moura; J J G Moura; M J Romão; J Trincão
Journal:  J Biol Inorg Chem       Date:  2010-09-07       Impact factor: 3.358

5.  Structural basis for the function of DEAH helicases.

Authors:  Yangzi He; Gregers R Andersen; Klaus H Nielsen
Journal:  EMBO Rep       Date:  2010-02-19       Impact factor: 8.807

6.  Mutant bacterial sodium channels as models for local anesthetic block of eukaryotic proteins.

Authors:  Natalie E Smith; Ben Corry
Journal:  Channels (Austin)       Date:  2016-02-06       Impact factor: 2.581

7.  Analysis of the human cofilin 1 structure reveals conformational changes required for actin binding.

Authors:  Marta Klejnot; Mads Gabrielsen; Jenifer Cameron; Andrzej Mleczak; Sandeep K Talapatra; Frank Kozielski; Andrew Pannifer; Michael F Olson
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2013-08-17

8.  Creating an α7 nicotinic acetylcholine recognition domain from the acetylcholine-binding protein: crystallographic and ligand selectivity analyses.

Authors:  Akos Nemecz; Palmer Taylor
Journal:  J Biol Chem       Date:  2011-10-18       Impact factor: 5.157

9.  The structural basis of FtsY recruitment and GTPase activation by SRP RNA.

Authors:  Felix Voigts-Hoffmann; Nikolaus Schmitz; Kuang Shen; Shu-Ou Shan; Sandro F Ataide; Nenad Ban
Journal:  Mol Cell       Date:  2013-11-07       Impact factor: 17.970

10.  Unique thrombin inhibition mechanism by anophelin, an anticoagulant from the malaria vector.

Authors:  Ana C Figueiredo; Daniele de Sanctis; Ricardo Gutiérrez-Gallego; Tatiana B Cereija; Sandra Macedo-Ribeiro; Pablo Fuentes-Prior; Pedro José Barbosa Pereira
Journal:  Proc Natl Acad Sci U S A       Date:  2012-12-05       Impact factor: 11.205
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