Literature DB >> 19389629

Combination of reverse and chemical genetic screens reveals angiogenesis inhibitors and targets.

Mattias Kalén1, Elisabet Wallgard, Noomi Asker, Aidas Nasevicius, Elisabet Athley, Erik Billgren, Jon D Larson, Shannon A Wadman, Elizabeth Norseng, Karl J Clark, Liqun He, Linda Karlsson-Lindahl, Ann-Katrin Häger, Holger Weber, Hellmut Augustin, Tore Samuelsson, Chelsy K Kemmet, Carly M Utesch, Jeffrey J Essner, Perry B Hackett, Mats Hellström.   

Abstract

We combined reverse and chemical genetics to identify targets and compounds modulating blood vessel development. Through transcript profiling in mice, we identified 150 potentially druggable microvessel-enriched gene products. Orthologs of 50 of these were knocked down in a reverse genetic screen in zebrafish, demonstrating that 16 were necessary for developmental angiogenesis. In parallel, 1280 pharmacologically active compounds were screened in a human cell-based assay, identifying 28 compounds selectively inhibiting endothelial sprouting. Several links were revealed between the results of the reverse and chemical genetic screens, including the serine/threonine (S/T) phosphatases ppp1ca, ppp1cc, and ppp4c and an inhibitor of this gene family; Endothall. Our results suggest that the combination of reverse and chemical genetic screens, in vertebrates, is an efficient strategy for the identification of drug targets and compounds that modulate complex biological systems, such as angiogenesis.

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Year:  2009        PMID: 19389629      PMCID: PMC3984492          DOI: 10.1016/j.chembiol.2009.02.010

Source DB:  PubMed          Journal:  Chem Biol        ISSN: 1074-5521


  49 in total

1.  High-fidelity mRNA amplification for gene profiling.

Authors:  E Wang; L D Miller; G A Ohnmacht; E T Liu; F M Marincola
Journal:  Nat Biotechnol       Date:  2000-04       Impact factor: 54.908

2.  mRNA expression profiling of laser microbeam microdissected cells from slender embryonic structures.

Authors:  Stefan J Scheidl; Sven Nilsson; Mattias Kalén; Mats Hellström; Minoru Takemoto; Joakim Håkansson; Per Lindahl
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Journal:  J Pharmacol Exp Ther       Date:  2000-08       Impact factor: 4.030

4.  Effective targeted gene 'knockdown' in zebrafish.

Authors:  A Nasevicius; S C Ekker
Journal:  Nat Genet       Date:  2000-10       Impact factor: 38.330

Review 5.  Cyclooxygenase-2 and 5-lipoxygenase converging functions on cell proliferation and tumor angiogenesis: implications for cancer therapy.

Authors:  Mario Romano; Joan Claria
Journal:  FASEB J       Date:  2003-11       Impact factor: 5.191

6.  Protein phosphatase-2A regulates endothelial cell motility and both the phosphorylation and the stability of focal adhesion complexes.

Authors:  M Rita I Young; Kristin Kolesiak; Jeremy Meisinger
Journal:  Int J Cancer       Date:  2002-07-20       Impact factor: 7.396

7.  Dissection of angiogenic signaling in zebrafish using a chemical genetic approach.

Authors:  Joanne Chan; Peter E Bayliss; Jeanette M Wood; Thomas M Roberts
Journal:  Cancer Cell       Date:  2002-04       Impact factor: 31.743

Review 8.  Protein phosphatase 1--targeted in many directions.

Authors:  Patricia T W Cohen
Journal:  J Cell Sci       Date:  2002-01-15       Impact factor: 5.285

Review 9.  Statistical tests for differential expression in cDNA microarray experiments.

Authors:  Xiangqin Cui; Gary A Churchill
Journal:  Genome Biol       Date:  2003-03-17       Impact factor: 13.583

Review 10.  Morphants: a new systematic vertebrate functional genomics approach.

Authors:  S C Ekker
Journal:  Yeast       Date:  2000-12       Impact factor: 3.239

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  20 in total

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Journal:  Development       Date:  2015-08-07       Impact factor: 6.868

2.  Phenotype-based high-content chemical library screening identifies statins as inhibitors of in vivo lymphangiogenesis.

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Journal:  Proc Natl Acad Sci U S A       Date:  2012-09-04       Impact factor: 11.205

Review 3.  Molecular basis for endothelial lumen formation and tubulogenesis during vasculogenesis and angiogenic sprouting.

Authors:  George E Davis; Amber N Stratman; Anastasia Sacharidou; Wonshill Koh
Journal:  Int Rev Cell Mol Biol       Date:  2011       Impact factor: 6.813

4.  A chemical screen to identify novel inhibitors of fin regeneration in zebrafish.

Authors:  Douglas Oppedal; Matthew I Goldsmith
Journal:  Zebrafish       Date:  2010-03       Impact factor: 1.985

5.  Moesin1 and Ve-cadherin are required in endothelial cells during in vivo tubulogenesis.

Authors:  Ying Wang; Mark S Kaiser; Jon D Larson; Aidas Nasevicius; Karl J Clark; Shannon A Wadman; Sharon E Roberg-Perez; Stephen C Ekker; Perry B Hackett; Maura McGrail; Jeffrey J Essner
Journal:  Development       Date:  2010-09       Impact factor: 6.868

Review 6.  Zebrafish xenotransplantation as a tool for in vivo cancer study.

Authors:  Beibei Zhang; Chao Xuan; Yunxi Ji; Weiming Zhang; Daogang Wang
Journal:  Fam Cancer       Date:  2015-09       Impact factor: 2.375

7.  PD 404,182 is a virocidal small molecule that disrupts hepatitis C virus and human immunodeficiency virus.

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8.  Generation of Rab-based transgenic lines for in vivo studies of endosome biology in zebrafish.

Authors:  Brian S Clark; Mark Winter; Andrew R Cohen; Brian A Link
Journal:  Dev Dyn       Date:  2011-10-04       Impact factor: 3.780

Review 9.  Interactions between α-tocopherol, polyunsaturated fatty acids, and lipoxygenases during embryogenesis.

Authors:  Katie M Lebold; Maret G Traber
Journal:  Free Radic Biol Med       Date:  2013-08-03       Impact factor: 7.376

10.  A novel and potent inhibitor of dimethylarginine dimethylaminohydrolase: a modulator of cardiovascular nitric oxide.

Authors:  Yohannes T Ghebremariam; Daniel A Erlanson; John P Cooke
Journal:  J Pharmacol Exp Ther       Date:  2013-10-17       Impact factor: 4.030

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