Literature DB >> 19386484

Evolution of protein modularity.

Edward N Trifonov1, Zakharia M Frenkel.   

Abstract

Proteins in their evolution appear to follow several discrete stages, which is reflected in their modular organization. The sequences of the protein modules are highly variable while their functions and structures are rather conserved. The relatedness of the variable sequences is well represented by the networks in natural protein sequence space that also suggests evolutionary connections.

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Year:  2009        PMID: 19386484     DOI: 10.1016/j.sbi.2009.03.007

Source DB:  PubMed          Journal:  Curr Opin Struct Biol        ISSN: 0959-440X            Impact factor:   6.809


  15 in total

Review 1.  Divergence and convergence in enzyme evolution: parallel evolution of paraoxonases from quorum-quenching lactonases.

Authors:  Mikael Elias; Dan S Tawfik
Journal:  J Biol Chem       Date:  2011-11-08       Impact factor: 5.157

2.  Membrane anchoring of aminoacyl-tRNA synthetases by convergent acquisition of a novel protein domain.

Authors:  Elvira Olmedo-Verd; Javier Santamaría-Gómez; Jesús A G Ochoa de Alda; Lluis Ribas de Pouplana; Ignacio Luque
Journal:  J Biol Chem       Date:  2011-09-30       Impact factor: 5.157

3.  A modular perspective of protein structures: application to fragment based loop modeling.

Authors:  Narcis Fernandez-Fuentes; Andras Fiser
Journal:  Methods Mol Biol       Date:  2013

4.  Structural characteristics of novel protein folds.

Authors:  Narcis Fernandez-Fuentes; Joseph M Dybas; Andras Fiser
Journal:  PLoS Comput Biol       Date:  2010-04-22       Impact factor: 4.475

5.  Repression of G1/S transcription is mediated via interaction of the GTB motifs of Nrm1 and Whi5 with Swi6.

Authors:  Anna Travesa; Tatyana I Kalashnikova; Robertus A M de Bruin; Sarah Rose Cass; Charly Chahwan; David E Lee; Noel F Lowndes; Curt Wittenberg
Journal:  Mol Cell Biol       Date:  2013-02-04       Impact factor: 4.272

6.  Thermal stability of Cpl-7 endolysin from the streptococcus pneumoniae bacteriophage Cp-7; cell wall-targeting of its CW_7 motifs.

Authors:  Noemí Bustamante; Palma Rico-Lastres; Ernesto García; Pedro García; Margarita Menéndez
Journal:  PLoS One       Date:  2012-10-08       Impact factor: 3.240

7.  PhEVER: a database for the global exploration of virus-host evolutionary relationships.

Authors:  Leonor Palmeira; Simon Penel; Vincent Lotteau; Chantal Rabourdin-Combe; Christian Gautier
Journal:  Nucleic Acids Res       Date:  2010-11-16       Impact factor: 16.971

8.  Protein structural modularity and robustness are associated with evolvability.

Authors:  Mary M Rorick; Günter P Wagner
Journal:  Genome Biol Evol       Date:  2011-05-21       Impact factor: 3.416

9.  Structural phylogenomics retrodicts the origin of the genetic code and uncovers the evolutionary impact of protein flexibility.

Authors:  Gustavo Caetano-Anollés; Minglei Wang; Derek Caetano-Anollés
Journal:  PLoS One       Date:  2013-08-21       Impact factor: 3.240

10.  Multifunctionality and diversity of GDSL esterase/lipase gene family in rice (Oryza sativa L. japonica) genome: new insights from bioinformatics analysis.

Authors:  Hanna Chepyshko; Chia-Ping Lai; Li-Ming Huang; Jyung-Hurng Liu; Jei-Fu Shaw
Journal:  BMC Genomics       Date:  2012-07-15       Impact factor: 3.969

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