Literature DB >> 19383305

Use of high density antibody arrays to validate and discover cancer serum biomarkers.

Christian M Loch1, Arturo B Ramirez, Yan Liu, Cassandra L Sather, Jeffrey J Delrow, Nathalie Scholler, Barbara M Garvik, Nicole D Urban, Martin W McIntosh, Paul D Lampe.   

Abstract

Perhaps the greatest barrier to translation of serum biomarker discoveries is the inability to evaluate putative biomarkers in high throughput validation studies. Here we report on the development, production, and implementation of a high-density antibody microarray used to evaluate large numbers of candidate ovarian cancer serum biomarkers. The platform was shown to be useful for evaluation of individual antibodies for comparative analysis, such as with disease classification, and biomarker validation and discovery. We demonstrate its performance by showing that known tumor markers behave as expected. We also identify several promising biomarkers from a candidate list and generate hypotheses to support new discovery studies.

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Year:  2007        PMID: 19383305      PMCID: PMC2671017          DOI: 10.1016/j.molonc.2007.08.004

Source DB:  PubMed          Journal:  Mol Oncol        ISSN: 1574-7891            Impact factor:   6.603


  43 in total

Review 1.  The hallmarks of cancer.

Authors:  D Hanahan; R A Weinberg
Journal:  Cell       Date:  2000-01-07       Impact factor: 41.582

2.  Performance of antibody microarrays fabricated by either DNA-directed immobilization, direct spotting, or streptavidin-biotin attachment: a comparative study.

Authors:  Ron Wacker; Hendrik Schröder; Christof M Niemeyer
Journal:  Anal Biochem       Date:  2004-07-15       Impact factor: 3.365

Review 3.  Proteomics: from basic research to diagnostic application. A review of requirements & needs.

Authors:  Frank Vitzthum; Fritz Behrens; N Leigh Anderson; John H Shaw
Journal:  J Proteome Res       Date:  2005 Jul-Aug       Impact factor: 4.466

4.  Antibody microarray profiling reveals individual and combined serum proteins associated with pancreatic cancer.

Authors:  Randal Orchekowski; Darren Hamelinck; Lin Li; Ewa Gliwa; Matt vanBrocklin; Jorge A Marrero; George F Vande Woude; Ziding Feng; Randall Brand; Brian B Haab
Journal:  Cancer Res       Date:  2005-12-01       Impact factor: 12.701

5.  Cathepsin B and its interacting proteins, bikunin and TSRC1, correlate with TNF-induced apoptosis of ovarian cancer cells OV-90.

Authors:  Jianping Liu; Qian Guo; Buxin Chen; Yao Yu; Hong Lu; Yu-Yang Li
Journal:  FEBS Lett       Date:  2005-12-12       Impact factor: 4.124

6.  Gene expression signatures differentiate ovarian/peritoneal serous carcinoma from diffuse malignant peritoneal mesothelioma.

Authors:  Ben Davidson; Zhen Zhang; Lilach Kleinberg; Mei Li; Vivi Ann Flørenes; Tian-Li Wang; Ie-Ming Shih
Journal:  Clin Cancer Res       Date:  2006-10-15       Impact factor: 12.531

7.  Keratin 8 sequence variants in patients with pancreatitis and pancreatic cancer.

Authors:  Matthias Treiber; Hans-Ulrich Schulz; Olfert Landt; Joost P H Drenth; Carlo Castellani; Francisco X Real; Nejat Akar; Rudolf W Ammann; Mario Bargetzi; Eesh Bhatia; Andrew Glenn Demaine; Cinzia Battagia; Andrew Kingsnorth; Derek O'Reilly; Kaspar Truninger; Monika Koudova; Julius Spicak; Milos Cerny; Hans-Jürgen Menzel; Pedro Moral; Pier Franco Pignatti; Maria Grazia Romanelli; Olga Rickards; Gian Franco De Stefano; Narcis Octavian Zarnescu; Gourdas Choudhuri; Sadiq S Sikora; Jan B M J Jansen; Frank Ulrich Weiss; Matthias Pietschmann; Niels Teich; Thomas M Gress; Johann Ockenga; Hartmut Schmidt; Andreas Kage; Juliane Halangk; Jonas Rosendahl; David Alexander Groneberg; Renate Nickel; Heiko Witt
Journal:  J Mol Med (Berl)       Date:  2006-10-13       Impact factor: 4.599

8.  Psoriasin (S100A7) is significantly up-regulated in human epithelial skin tumours.

Authors:  Noemi Moubayed; Michael Weichenthal; Jürgen Harder; Elke Wandel; Michael Sticherling; Regine Gläser
Journal:  J Cancer Res Clin Oncol       Date:  2006-11-29       Impact factor: 4.553

9.  Use of high density antibody arrays to validate and discover cancer serum biomarkers.

Authors:  Christian M Loch; Arturo B Ramirez; Yan Liu; Cassandra L Sather; Jeffrey J Delrow; Nathalie Scholler; Barbara M Garvik; Nicole D Urban; Martin W McIntosh; Paul D Lampe
Journal:  Mol Oncol       Date:  2007-08-30       Impact factor: 6.603

10.  Gene expression profiling of human ovarian tumours.

Authors:  S Biade; M Marinucci; J Schick; D Roberts; G Workman; E H Sage; P J O'Dwyer; V A Livolsi; S W Johnson
Journal:  Br J Cancer       Date:  2006-09-12       Impact factor: 7.640

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  23 in total

1.  Candidate early detection protein biomarkers for ER+/PR+ invasive ductal breast carcinoma identified using pre-clinical plasma from the WHI observational study.

Authors:  Matthew F Buas; Jung-hyun Rho; Xiaoyu Chai; Yuzheng Zhang; Paul D Lampe; Christopher I Li
Journal:  Breast Cancer Res Treat       Date:  2015-08-30       Impact factor: 4.872

2.  Cross-species antibody microarray interrogation identifies a 3-protein panel of plasma biomarkers for early diagnosis of pancreas cancer.

Authors:  Justin E Mirus; Yuzheng Zhang; Christopher I Li; Anna E Lokshin; Ross L Prentice; Sunil R Hingorani; Paul D Lampe
Journal:  Clin Cancer Res       Date:  2015-01-14       Impact factor: 12.531

3.  Protein and glycomic plasma markers for early detection of adenoma and colon cancer.

Authors:  Jung-Hyun Rho; Jon J Ladd; Christopher I Li; John D Potter; Yuzheng Zhang; David Shelley; David Shibata; Domenico Coppola; Hiroyuki Yamada; Hidenori Toyoda; Toshifumi Tada; Takashi Kumada; Dean E Brenner; Samir M Hanash; Paul D Lampe
Journal:  Gut       Date:  2016-11-07       Impact factor: 23.059

4.  Discovery and preliminary confirmation of novel early detection biomarkers for triple-negative breast cancer using preclinical plasma samples from the Women's Health Initiative observational study.

Authors:  Christopher I Li; Justin E Mirus; Yuzheng Zhang; Arturo B Ramirez; Jon J Ladd; Ross L Prentice; Martin W McIntosh; Samir M Hanash; Paul D Lampe
Journal:  Breast Cancer Res Treat       Date:  2012-08-19       Impact factor: 4.872

5.  Up-regulated proteins in the fluid bathing the tumour cell microenvironment as potential serological markers for early detection of cancer of the breast.

Authors:  Pavel Gromov; Irina Gromova; Jakob Bunkenborg; Teresa Cabezon; José M A Moreira; Vera Timmermans-Wielenga; Peter Roepstorff; Fritz Rank; Julio E Celis
Journal:  Mol Oncol       Date:  2009-11-23       Impact factor: 6.603

6.  Dual-color proteomic profiling of complex samples with a microarray of 810 cancer-related antibodies.

Authors:  Christoph Schröder; Anette Jacob; Sarah Tonack; Tomasz P Radon; Martin Sill; Manuela Zucknick; Sven Rüffer; Eithne Costello; John P Neoptolemos; Tatjana Crnogorac-Jurcevic; Andrea Bauer; Kurt Fellenberg; Jörg D Hoheisel
Journal:  Mol Cell Proteomics       Date:  2010-02-16       Impact factor: 5.911

7.  Oncoproteomic profiling with antibody microarrays.

Authors:  Mohamed Ss Alhamdani; Christoph Schröder; Jörg D Hoheisel
Journal:  Genome Med       Date:  2009-07-06       Impact factor: 11.117

Review 8.  Targeted proteomic strategy for clinical biomarker discovery.

Authors:  Ralph Schiess; Bernd Wollscheid; Ruedi Aebersold
Journal:  Mol Oncol       Date:  2008-12-11       Impact factor: 6.603

9.  Use of high density antibody arrays to validate and discover cancer serum biomarkers.

Authors:  Christian M Loch; Arturo B Ramirez; Yan Liu; Cassandra L Sather; Jeffrey J Delrow; Nathalie Scholler; Barbara M Garvik; Nicole D Urban; Martin W McIntosh; Paul D Lampe
Journal:  Mol Oncol       Date:  2007-08-30       Impact factor: 6.603

10.  A single lysis solution for the analysis of tissue samples by different proteomic technologies.

Authors:  Pavel Gromov; Julio E Celis; Irina Gromova; Fritz Rank; Vera Timmermans-Wielenga; José M A Moreira
Journal:  Mol Oncol       Date:  2008-10-02       Impact factor: 6.603

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