Literature DB >> 19382793

Tautomerism in cytosine and uracil: an experimental and theoretical core level spectroscopic study.

Vitaliy Feyer1, Oksana Plekan, Robert Richter, Marcello Coreno, Gemma Vall-llosera, Kevin C Prince, Alexander B Trofimov, Irina L Zaytseva, Tatyana E Moskovskaya, Evgeniy V Gromov, Jochen Schirmer.   

Abstract

The O, N, and C 1s core level photoemission spectra of the nucleobases cytosine and uracil have been measured in the vapor phase, and the results have been interpreted via theoretical calculations. Our calculations accurately predict the relative binding energies of the core level features observed in the experimental photoemission results and provide a full assignment. In agreement with previous work, a single tautomer of uracil is populated at 405 K, giving rise to relatively simple spectra. At 450 K, three tautomers of cytosine, one of which may consist of two rotamers, are identified, and their populations are determined. This resolves inconsistencies between recent laser studies of this molecule in which the rare imino-oxo tautomer was not observed and older microwave spectra in which it was reported.

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Year:  2009        PMID: 19382793     DOI: 10.1021/jp900998a

Source DB:  PubMed          Journal:  J Phys Chem A        ISSN: 1089-5639            Impact factor:   2.781


  5 in total

1.  Double-core-hole spectroscopy for chemical analysis with an intense X-ray femtosecond laser.

Authors:  Nora Berrah; Li Fang; Brendan Murphy; Timur Osipov; Kiyoshi Ueda; Edwin Kukk; Raimund Feifel; Peter van der Meulen; Peter Salen; Henning T Schmidt; Richard D Thomas; Mats Larsson; Robert Richter; Kevin C Prince; John D Bozek; Christoph Bostedt; Shin-ichi Wada; Maria N Piancastelli; Motomichi Tashiro; Masahiro Ehara
Journal:  Proc Natl Acad Sci U S A       Date:  2011-10-03       Impact factor: 11.205

2.  Protonation preferentially stabilizes minor tautomers of the halouracils: IRMPD action spectroscopy and theoretical studies.

Authors:  K T Crampton; A I Rathur; Y-w Nei; G Berden; J Oomens; M T Rodgers
Journal:  J Am Soc Mass Spectrom       Date:  2012-07-21       Impact factor: 3.109

3.  TURBOMOLE: Modular program suite for ab initio quantum-chemical and condensed-matter simulations.

Authors:  Sree Ganesh Balasubramani; Guo P Chen; Sonia Coriani; Michael Diedenhofen; Marius S Frank; Yannick J Franzke; Filipp Furche; Robin Grotjahn; Michael E Harding; Christof Hättig; Arnim Hellweg; Benjamin Helmich-Paris; Christof Holzer; Uwe Huniar; Martin Kaupp; Alireza Marefat Khah; Sarah Karbalaei Khani; Thomas Müller; Fabian Mack; Brian D Nguyen; Shane M Parker; Eva Perlt; Dmitrij Rappoport; Kevin Reiter; Saswata Roy; Matthias Rückert; Gunnar Schmitz; Marek Sierka; Enrico Tapavicza; David P Tew; Christoph van Wüllen; Vamsee K Voora; Florian Weigend; Artur Wodyński; Jason M Yu
Journal:  J Chem Phys       Date:  2020-05-14       Impact factor: 3.488

4.  Expanded use of sense codons is regulated by modified cytidines in tRNA.

Authors:  William A Cantara; Frank V Murphy; Hasan Demirci; Paul F Agris
Journal:  Proc Natl Acad Sci U S A       Date:  2013-06-18       Impact factor: 11.205

5.  Unravelling molecular interactions in uracil clusters by XPS measurements assisted by ab initio and tight-binding simulations.

Authors:  Giuseppe Mattioli; Lorenzo Avaldi; Paola Bolognesi; John D Bozek; Mattea C Castrovilli; Jacopo Chiarinelli; Alicja Domaracka; Suvasthika Indrajith; Sylvain Maclot; Aleksandar R Milosavljević; Chiara Nicolafrancesco; Christophe Nicolas; Patrick Rousseau
Journal:  Sci Rep       Date:  2020-08-04       Impact factor: 4.379

  5 in total

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