Literature DB >> 19381975

Comparative genomic hybridization: DNA preparation for microarray fabrication.

Richard Redon1, Diane Rigler, Nigel P Carter.   

Abstract

The spatial resolution of microarray-based comparative genomic hybridization (array-CGH) is dependent on the length and density of target DNA sequences covering the chromosomal region of interest. Here we describe the methods developed at the Wellcome Trust Sanger Institute (Cambridge, UK) to construct microarrays comprising large-insert clones available through genome sequencing projects. These methods are applicable to Bacterial and Phage Artificial Chromosomes (BAC and PAC) as well as fosmid and cosmid clones. The protocols are scalable for the construction of microarrays composed of several hundreds up to several ten thousands clones.

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Year:  2009        PMID: 19381975      PMCID: PMC2867217          DOI: 10.1007/978-1-59745-538-1_16

Source DB:  PubMed          Journal:  Methods Mol Biol        ISSN: 1064-3745


  8 in total

1.  Real-time PCR-based method for assaying the purity of bacterial artificial chromosome preparations.

Authors:  P K Foreman; R W Davis
Journal:  Biotechniques       Date:  2000-09       Impact factor: 1.993

2.  DNA microarrays for comparative genomic hybridization based on DOP-PCR amplification of BAC and PAC clones.

Authors:  Heike Fiegler; Philippa Carr; Eleanor J Douglas; Deborah C Burford; Sarah Hunt; Carol E Scott; James Smith; David Vetrie; Patricia Gorman; Ian P M Tomlinson; Nigel P Carter
Journal:  Genes Chromosomes Cancer       Date:  2003-04       Impact factor: 5.006

3.  Method for manufacturing whole-genome microarrays by rolling circle amplification.

Authors:  Denis A Smirnov; Josh T Burdick; Michael Morley; Vivian G Cheung
Journal:  Genes Chromosomes Cancer       Date:  2004-05       Impact factor: 5.006

4.  A tiling resolution DNA microarray with complete coverage of the human genome.

Authors:  Adrian S Ishkanian; Chad A Malloff; Spencer K Watson; Ronald J DeLeeuw; Bryan Chi; Bradley P Coe; Antoine Snijders; Donna G Albertson; Daniel Pinkel; Marco A Marra; Victor Ling; Calum MacAulay; Wan L Lam
Journal:  Nat Genet       Date:  2004-02-15       Impact factor: 38.330

5.  Degenerate oligonucleotide-primed PCR: general amplification of target DNA by a single degenerate primer.

Authors:  H Telenius; N P Carter; C E Bebb; M Nordenskjöld; B A Ponder; A Tunnacliffe
Journal:  Genomics       Date:  1992-07       Impact factor: 5.736

6.  Matrix-based comparative genomic hybridization: biochips to screen for genomic imbalances.

Authors:  S Solinas-Toldo; S Lampel; S Stilgenbauer; J Nickolenko; A Benner; H Döhner; T Cremer; P Lichter
Journal:  Genes Chromosomes Cancer       Date:  1997-12       Impact factor: 5.006

7.  Amplicon mapping and transcriptional analysis pinpoint cyclin L as a candidate oncogene in head and neck cancer.

Authors:  Richard Redon; Thomas Hussenet; Gaétan Bour; Krishna Caulee; Bernard Jost; Danièle Muller; Joseph Abecassis; Stanislas du Manoir
Journal:  Cancer Res       Date:  2002-11-01       Impact factor: 12.701

8.  High resolution analysis of DNA copy number variation using comparative genomic hybridization to microarrays.

Authors:  D Pinkel; R Segraves; D Sudar; S Clark; I Poole; D Kowbel; C Collins; W L Kuo; C Chen; Y Zhai; S H Dairkee; B M Ljung; J W Gray; D G Albertson
Journal:  Nat Genet       Date:  1998-10       Impact factor: 38.330

  8 in total
  3 in total

1.  Evaluation of one- and two-color gene expression arrays for microbial comparative genome hybridization analyses in routine applications.

Authors:  Roland Schwarz; Biju Joseph; Gabriele Gerlach; Anja Schramm-Glück; Kathrin Engelhard; Matthias Frosch; Tobias Müller; Christoph Schoen
Journal:  J Clin Microbiol       Date:  2010-06-30       Impact factor: 5.948

2.  Genetic and expression changes in TNF-α as a risk factor for rheumatoid arthritis pathogenesis in northeast India.

Authors:  Somdatta Das; Chitralekha Baruah; Anjan Kumar Saikia; Diptika Tiwari; Sujoy Bose
Journal:  J Genet       Date:  2019-03       Impact factor: 1.166

Review 3.  Potential Clinical Application of Genomics in Multiple Myeloma.

Authors:  Cinnie Yentia Soekojo; Sanjay de Mel; Melissa Ooi; Benedict Yan; Wee Joo Chng
Journal:  Int J Mol Sci       Date:  2018-06-10       Impact factor: 5.923

  3 in total

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