Literature DB >> 19380317

CELLULAR OPEN RESOURCE (COR): current status and future directions.

Alan Garny1, Denis Noble, Peter J Hunter, Peter Kohl.   

Abstract

The need for tools to aid the description and sharing of biological models was highlighted at the launch of the International Union of Physiological Sciences Physiome Project in 1997. This has resulted in the release, in 2001, of the CellML specifications (http://www.cellml.org/specifications/). CELLULAR OPEN RESOURCE (COR) was among the early adopters of this standard, eventually forming the first publicly available CellML-based modelling and collaboration environment. From the onset, COR was designed to provide an environment that could not only be used by experienced modellers, but also by experimentalists, teachers and students. It therefore tries to combine a user-friendly interface with a computationally efficient numerical engine. In this paper, we introduce the philosophy behind COR, explain its user interface and current functionality, including the editing and running of CellML files, highlight lessons learned from user feedback and problems experienced during the development of COR and conclude by exploring future development potential.

Mesh:

Year:  2009        PMID: 19380317     DOI: 10.1098/rsta.2008.0289

Source DB:  PubMed          Journal:  Philos Trans A Math Phys Eng Sci        ISSN: 1364-503X            Impact factor:   4.226


  23 in total

1.  How the Hodgkin-Huxley equations inspired the Cardiac Physiome Project.

Authors:  Denis Noble; Alan Garny; Penelope J Noble
Journal:  J Physiol       Date:  2012-04-02       Impact factor: 5.182

2.  An updated computational model of rabbit sinoatrial action potential to investigate the mechanisms of heart rate modulation.

Authors:  Stefano Severi; Matteo Fantini; Lara A Charawi; Dario DiFrancesco
Journal:  J Physiol       Date:  2012-06-18       Impact factor: 5.182

Review 3.  The challenges of informatics in synthetic biology: from biomolecular networks to artificial organisms.

Authors:  Gil Alterovitz; Taro Muso; Marco F Ramoni
Journal:  Brief Bioinform       Date:  2009-11-11       Impact factor: 11.622

4.  Transmural cellular heterogeneity in myocardial electromechanics.

Authors:  Anastasia Khokhlova; Nathalie Balakina-Vikulova; Leonid Katsnelson; Gentaro Iribe; Olga Solovyova
Journal:  J Physiol Sci       Date:  2017-06-01       Impact factor: 2.781

5.  Positive Feedback Mechanisms among Local Ca Releases, NCX, and ICaL Ignite Pacemaker Action Potentials.

Authors:  Alexey E Lyashkov; Joachim Behar; Edward G Lakatta; Yael Yaniv; Victor A Maltsev
Journal:  Biophys J       Date:  2018-03-13       Impact factor: 4.033

6.  Ca²⁺-induced delayed afterdepolarizations are triggered by dyadic subspace Ca2²⁺ affirming that increasing SERCA reduces aftercontractions.

Authors:  Martin Fink; Penelope J Noble; Denis Noble
Journal:  Am J Physiol Heart Circ Physiol       Date:  2011-06-10       Impact factor: 4.733

7.  Partial restoration of the long QT syndrome associated KCNQ1 A341V mutant by the KCNE1 β-subunit.

Authors:  Ikuomi Mikuni; Carlos G Torres; Martin W Bienengraeber; Wai-Meng Kwok
Journal:  Biochim Biophys Acta       Date:  2011-08-10

8.  Differential expression of hERG1 channel isoforms reproduces properties of native I(Kr) and modulates cardiac action potential characteristics.

Authors:  Anders Peter Larsen; Søren-Peter Olesen
Journal:  PLoS One       Date:  2010-02-02       Impact factor: 3.240

9.  Integrating multi-scale data to create a virtual physiological mouse heart.

Authors:  Sander Land; Steven A Niederer; William E Louch; Ole M Sejersted; Nicolas P Smith
Journal:  Interface Focus       Date:  2013-04-06       Impact factor: 3.906

Review 10.  Application of cardiac electrophysiology simulations to pro-arrhythmic safety testing.

Authors:  Gary R Mirams; Mark R Davies; Yi Cui; Peter Kohl; Denis Noble
Journal:  Br J Pharmacol       Date:  2012-11       Impact factor: 8.739

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