Literature DB >> 24427525

Integrating multi-scale data to create a virtual physiological mouse heart.

Sander Land1, Steven A Niederer2, William E Louch3, Ole M Sejersted3, Nicolas P Smith1.   

Abstract

While the virtual physiological human (VPH) project has made great advances in human modelling, many of the tools and insights developed as part of this initiative are also applicable for facilitating mechanistic understanding of the physiology of a range of other species. This process, in turn, has the potential to provide human relevant insights via a different scientific path. Specifically, the increasing use of mice in experimental research, not yet fully complemented by a similar increase in computational modelling, is currently missing an important opportunity for using and interpreting this growing body of experimental data to improve our understanding of cardiac function. This overview describes our work to address this issue by creating a virtual physiological mouse model of the heart. We describe the similarities between human- and mouse-focused modelling, including the reuse of VPH tools, and the development of methods for investigating parameter sensitivity that are applicable across species. We show how previous results using this approach have already provided important biological insights, and how these can also be used to advance VPH heart models. Finally, we show an example application of this approach to test competing multi-scale hypotheses by investigating variations in length-dependent properties of cardiac muscle.

Entities:  

Keywords:  cardiac multi-scale model; genetic knockout studies; heterogeneous length-dependent activation; mouse modelling; parameter sensitivity

Year:  2013        PMID: 24427525      PMCID: PMC3638477          DOI: 10.1098/rsfs.2012.0076

Source DB:  PubMed          Journal:  Interface Focus        ISSN: 2042-8898            Impact factor:   3.906


  41 in total

1.  A mathematical treatment of integrated Ca dynamics within the ventricular myocyte.

Authors:  Thomas R Shannon; Fei Wang; José Puglisi; Christopher Weber; Donald M Bers
Journal:  Biophys J       Date:  2004-09-03       Impact factor: 4.033

2.  Magnitude of length-dependent changes in contractile properties varies with titin isoform in rat ventricles.

Authors:  Jitandrakumar R Patel; Jonathan M Pleitner; Richard L Moss; Marion L Greaser
Journal:  Am J Physiol Heart Circ Physiol       Date:  2011-12-02       Impact factor: 4.733

3.  Calcium sensitivity and the Frank-Starling mechanism of the heart are increased in titin N2B region-deficient mice.

Authors:  Eun-Jeong Lee; Jun Peng; Michael Radke; Michael Gotthardt; Henk L Granzier
Journal:  J Mol Cell Cardiol       Date:  2010-05-23       Impact factor: 5.000

Review 4.  Interpreting genetic effects through models of cardiac electromechanics.

Authors:  S A Niederer; S Land; S W Omholt; N P Smith
Journal:  Am J Physiol Heart Circ Physiol       Date:  2012-10-05       Impact factor: 4.733

5.  Transmural heterogeneity of repolarization and Ca2+ handling in a model of mouse ventricular tissue.

Authors:  Vladimir E Bondarenko; Randall L Rasmusson
Journal:  Am J Physiol Heart Circ Physiol       Date:  2010-06-04       Impact factor: 4.733

6.  Differential expression of cardiac titin isoforms and modulation of cellular stiffness.

Authors:  O Cazorla; A Freiburg; M Helmes; T Centner; M McNabb; Y Wu; K Trombitás; S Labeit; H Granzier
Journal:  Circ Res       Date:  2000 Jan 7-21       Impact factor: 17.367

7.  Sodium accumulation in SERCA knockout-induced heart failure.

Authors:  Liren Li; William E Louch; Steven A Niederer; Jan M Aronsen; Geir Christensen; Ole M Sejersted; Nicolas P Smith
Journal:  Biophys J       Date:  2012-05-02       Impact factor: 4.033

Review 8.  The historical biogeography of Mammalia.

Authors:  Mark S Springer; Robert W Meredith; Jan E Janecka; William J Murphy
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2011-09-12       Impact factor: 6.237

Review 9.  The giant protein titin: a major player in myocardial mechanics, signaling, and disease.

Authors:  Henk L Granzier; Siegfried Labeit
Journal:  Circ Res       Date:  2004-02-20       Impact factor: 17.367

10.  Titin and troponin: central players in the frank-starling mechanism of the heart.

Authors:  Norio Fukuda; Takako Terui; Iwao Ohtsuki; Shin'ichi Ishiwata; Satoshi Kurihara
Journal:  Curr Cardiol Rev       Date:  2009-05
View more
  5 in total

1.  A Novel In Silico Electromechanical Model of Human Ventricular Cardiomyocyte.

Authors:  Chiara Bartolucci; Mohamadamin Forouzandehmehr; Stefano Severi; Michelangelo Paci
Journal:  Front Physiol       Date:  2022-06-01       Impact factor: 4.755

2.  Predicting the murine enterocyte metabolic response to diets that differ in lipid and carbohydrate composition.

Authors:  Neeraj Sinha; Maria Suarez-Diez; Evert M van Schothorst; Jaap Keijer; Vitor A P Martins Dos Santos; Guido J E J Hooiveld
Journal:  Sci Rep       Date:  2017-08-18       Impact factor: 4.379

3.  A mathematical model of hiPSC cardiomyocytes electromechanics.

Authors:  Mohamadamin Forouzandehmehr; Jussi T Koivumäki; Jari Hyttinen; Michelangelo Paci
Journal:  Physiol Rep       Date:  2021-11

4.  Towards Personalized Cardiology: Multi-Scale Modeling of the Failing Heart.

Authors:  Elham Kayvanpour; Tommaso Mansi; Farbod Sedaghat-Hamedani; Ali Amr; Dominik Neumann; Bogdan Georgescu; Philipp Seegerer; Ali Kamen; Jan Haas; Karen S Frese; Maria Irawati; Emil Wirsz; Vanessa King; Sebastian Buss; Derliz Mereles; Edgar Zitron; Andreas Keller; Hugo A Katus; Dorin Comaniciu; Benjamin Meder
Journal:  PLoS One       Date:  2015-07-31       Impact factor: 3.240

5.  Stochastic multi-scale models of competition within heterogeneous cellular populations: Simulation methods and mean-field analysis.

Authors:  Roberto de la Cruz; Pilar Guerrero; Fabian Spill; Tomás Alarcón
Journal:  J Theor Biol       Date:  2016-07-22       Impact factor: 2.691

  5 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.