Literature DB >> 19378967

Cleavage of [4Fe-4S]-type clusters: breaking the symmetry.

Shuqiang Niu1, Toshiko Ichiye.   

Abstract

The cleavage of [<span class="Chemical">4Fe-4S]-type clusters is thought to be important in proteins such as <span class="Chemical">Fe-S scaffold proteins and nitrogenase. However, most [4Fe-4S](2+) clusters in proteins have two antiferromagnetically coupled high-spin layers in which a minority spin is delocalized in each layer, thus forming a symmetric Fe(2.5+)-Fe(2.5+) pair, and how cleavage occurs between the irons is puzzling because of the shared electron. Previously, we proposed a novel mechanism for the fission of a [4Fe-4S] core into two [2Fe-2S] cores in which the minority spin localizes on one iron, thus breaking the symmetry and creating a transition state with two Fe(3+)-Fe(2+) pairs. Cleavage first through the weak Fe(2+)-S bonds lowers the activation energy. Here, we propose a test of this mechanism: break the symmetry of the cluster by changing the ligands to promote spin localization, which should enhance reactivity. The cleavage reactions for the homoligand [Fe(4)S(4)L(4)](2-) (L = SCH(3), Cl, H) and heteroligand [Fe(4)S(4)(SCH(3))(2)L(2)](2-) (L = Cl, H) clusters in the gas phase were examined via broken-symmetry density functional theory calculations. In the heteroligand clusters, the minority spin localized on the iron coordinated by the weaker electron-donor ligand, and the reaction energy and activation barrier of the cleavage were lowered, which is in accord with our proposed mechanism and consistent with photoelectron spectroscopy and collision-induced dissociation experiments. These studies suggest that proteins requiring facile fission of their [4Fe-4S] cluster in their biological function might have spin-localized [4Fe-4S] clusters.

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Year:  2009        PMID: 19378967      PMCID: PMC2754062          DOI: 10.1021/jp900402y

Source DB:  PubMed          Journal:  J Phys Chem A        ISSN: 1089-5639            Impact factor:   2.781


  48 in total

Review 1.  Fe-S proteins in sensing and regulatory functions.

Authors:  H Beinert; P J Kiley
Journal:  Curr Opin Chem Biol       Date:  1999-04       Impact factor: 8.822

2.  A conformational mimic of the MgATP-bound "on state" of the nitrogenase iron protein.

Authors:  Sanchayita Sen; Robert Igarashi; Archer Smith; Michael K Johnson; Lance C Seefeldt; John W Peters
Journal:  Biochemistry       Date:  2004-02-24       Impact factor: 3.162

3.  Ground spin state variability in [Fe4S4(SR)4]3-. Synthetic analogs of the reduced clusters in ferredoxins and other iron-sulfur proteins: cases of extreme sensitivity of electronic state and structure to extrinsic factors.

Authors:  M J Carney; G C Papaefthymiou; K Spartalian; R B Frankel; R H Holm
Journal:  J Am Chem Soc       Date:  1988-08-01       Impact factor: 15.419

4.  Experimental evidence for the role of buried polar groups in determining the reduction potential of metalloproteins: the S79P variant of Chromatium vinosum HiPIP.

Authors:  E Babini; M Borsari; F Capozzi; L D Eltis; C Luchinat
Journal:  J Biol Inorg Chem       Date:  1999-12       Impact factor: 3.358

5.  Electronic structure and intrinsic redox properties of [2Fe-2S]+ clusters with tri- and tetracoordinate iron sites.

Authors:  You-Jun Fu; Shuqiang Niu; Toshiko Ichiye; Lai-Sheng Wang
Journal:  Inorg Chem       Date:  2005-03-07       Impact factor: 5.165

6.  Individual Reduction Potentials of the Iron Ions in Fe(2)S(2) and High-Potential Fe(4)S(4) Ferredoxins.

Authors:  Lucia Banci; Ivano Bertini; Giovanni Gori Savellini; Claudio Luchinat
Journal:  Inorg Chem       Date:  1996-07-03       Impact factor: 5.165

7.  Probing the electronic structure of [2Fe-2S] clusters with three coordinate iron sites by use of photoelectron spectroscopy.

Authors:  You-Jun Fu; Xin Yang; Xue-Bin Wang; Lai-Sheng Wang
Journal:  J Phys Chem A       Date:  2005-03-10       Impact factor: 2.781

8.  Electrochemical and spectroscopic characterization of the conversion of the 7Fe into the 8Fe form of ferredoxin III from Desulfovibrio africanus. Identification of a [4Fe-4S] cluster with one non-cysteine ligand.

Authors:  S J George; F A Armstrong; E C Hatchikian; A J Thomson
Journal:  Biochem J       Date:  1989-11-15       Impact factor: 3.857

9.  Characterization of iron binding in IscA, an ancient iron-sulphur cluster assembly protein.

Authors:  Huangen Ding; Robert J Clark
Journal:  Biochem J       Date:  2004-04-15       Impact factor: 3.857

10.  1H NMR investigation of the paramagnetic cluster environment in Pyrococcus furiosus three-iron ferredoxin: sequence-specific assignment of ligated cysteines independent of tertiary structure.

Authors:  C M Gorst; Y H Yeh; Q Teng; L Calzolai; Z H Zhou; M W Adams; G N La Mar
Journal:  Biochemistry       Date:  1995-01-17       Impact factor: 3.162

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  3 in total

1.  Electronic structure of the unique [4Fe-3S] cluster in O2-tolerant hydrogenases characterized by 57Fe Mossbauer and EPR spectroscopy.

Authors:  Maria-Eirini Pandelia; Dmytro Bykov; Robert Izsak; Pascale Infossi; Marie-Thérèse Giudici-Orticoni; Eckhard Bill; Frank Neese; Wolfgang Lubitz
Journal:  Proc Natl Acad Sci U S A       Date:  2012-12-24       Impact factor: 11.205

2.  Calculating standard reduction potentials of [4Fe-4S] proteins.

Authors:  Bradley Scott Perrin; Shuqiang Niu; Toshiko Ichiye
Journal:  J Comput Chem       Date:  2012-11-01       Impact factor: 3.376

3.  Mutation effects on charge transport through the p58c iron-sulfur protein.

Authors:  Ruijie D Teo; Agostino Migliore; David N Beratan
Journal:  Chem Sci       Date:  2020-02-21       Impact factor: 9.825

  3 in total

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