Literature DB >> 19378940

Optical signatures of molecular dissymmetry: combining theory with experiments to address stereochemical puzzles.

Parag Mukhopadhyay1, Peter Wipf, David N Beratan.   

Abstract

Modern chemistry emerged from the quest to describe the three-dimensional structure of molecules: van't Hoff's tetravalent carbon placed symmetry and dissymmetry at the heart of chemistry. In this Account, we explore how modern theory, synthesis, and spectroscopy can be used in concert to elucidate the symmetry and dissymmetry of molecules and their assemblies. Chiroptical spectroscopy, including optical rotatory dispersion (ORD), electronic circular dichroism (ECD), vibrational circular dichroism (VCD), and Raman optical activity (ROA), measures the response of dissymmetric structures to electromagnetic radiation. This response can in turn reveal the arrangement of atoms in space, but deciphering the molecular information encoded in chiroptical spectra requires an effective theoretical approach. Although important correlations between ECD and molecular stereochemistry have existed for some time, a battery of accurate new theoretical methods that link a much wider range of chiroptical spectroscopies to structure have emerged over the past decade. The promise of this field is considerable: theory and spectroscopy can assist in assigning the relative and absolute configurations of complex products, revealing the structure of noncovalent aggregates, defining metrics for molecular diversity based on polarization response, and designing chirally imprinted nanomaterials. The physical organic chemistry of chirality is fascinating in its own right: defining atomic and group contributions to optical rotation (OR) is now possible. Although the common expectation is that chiroptical response is determined solely by a chiral solute's electronic structure in a given environment, chiral imprinting effects on the surrounding medium and molecular assembly can, in fact, dominate the chiroptical signatures. The theoretical interpretation of chiroptical markers is challenging because the optical properties are subtle, resulting from the strong electric dipole and the weaker electric quadrupole and magnetic dipole perturbations by the electromagnetic field. Moreover, OR arises from a combination of nearly canceling contributions to the electronic response. Indeed, the challenge posed by the chiroptical properties delayed the advent of even qualitatively accurate descriptions for some chiroptical signatures until the past decade when, for example, prediction of the observed sign of experimental OR became accessible to theory. The computation of chiroptical signatures, in close coordination with synthesis and spectroscopy, provides a powerful framework to diagnose and interpret the dissymmetry of chemical structures and molecular assemblies. Chiroptical theory now produces new schemes to elucidate structure, to describe the specific molecular sources of chiroptical signatures, and to assist in our understanding of how dissymmetry is templated and propagated in the condensed phase.

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Year:  2009        PMID: 19378940      PMCID: PMC2704476          DOI: 10.1021/ar8002859

Source DB:  PubMed          Journal:  Acc Chem Res        ISSN: 0001-4842            Impact factor:   22.384


  41 in total

Review 1.  Intrinsically unstructured proteins: re-assessing the protein structure-function paradigm.

Authors:  P E Wright; H J Dyson
Journal:  J Mol Biol       Date:  1999-10-22       Impact factor: 5.469

2.  Towards Raman optical activity calculations of large molecules.

Authors:  Gérard Zuber; Michael-Rock Goldsmith; David N Beratan; Peter Wipf
Journal:  Chemphyschem       Date:  2005-04       Impact factor: 3.102

3.  Contribution of a solute's chiral solvent imprint to optical rotation.

Authors:  Parag Mukhopadhyay; Gérard Zuber; Peter Wipf; David N Beratan
Journal:  Angew Chem Int Ed Engl       Date:  2007       Impact factor: 15.336

4.  Chiral control of electron transmission through molecules.

Authors:  Spiros S Skourtis; David N Beratan; Ron Naaman; Abraham Nitzan; David H Waldeck
Journal:  Phys Rev Lett       Date:  2008-12-05       Impact factor: 9.161

5.  Conformational effects on optical rotation. 2-Substituted butanes.

Authors:  Kenneth B Wiberg; Yi-gui Wang; Patrick H Vaccaro; James R Cheeseman; Matthew R Luderer
Journal:  J Phys Chem A       Date:  2005-04-21       Impact factor: 2.781

6.  Protein dynamics tightly connected to the dynamics of surrounding and internal water molecules.

Authors:  Volkhard Helms
Journal:  Chemphyschem       Date:  2007-01-08       Impact factor: 3.102

7.  Chiral crystallization of glutamic acid on self assembled films of cysteine.

Authors:  David H Dressler; Yitzhak Mastai
Journal:  Chirality       Date:  2007-05-15       Impact factor: 2.437

8.  Chiral inversion of gold nanoparticles.

Authors:  Cyrille Gautier; Thomas Bürgi
Journal:  J Am Chem Soc       Date:  2008-05-07       Impact factor: 15.419

9.  A molecular dynamics study of chirality transfer: The impact of a chiral solute on an achiral solvent.

Authors:  Shihao Wang; N M Cann
Journal:  J Chem Phys       Date:  2008-08-07       Impact factor: 3.488

10.  Atomic contributions to the optical rotation angle as a quantitative probe of molecular chirality.

Authors:  R K Kondru; P Wipf; D N Beratan
Journal:  Science       Date:  1998-12-18       Impact factor: 47.728

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  3 in total

1.  Novel coherent two-dimensional optical spectroscopy probes of chirality exchange and fluctuations in molecules.

Authors:  František Šanda; Shaul Mukamel
Journal:  J Chem Phys       Date:  2011-11-21       Impact factor: 3.488

2.  Probing chirality fluctuations in molecules by nonlinear optical spectroscopy.

Authors:  N Mann; P Nalbach; S Mukamel; M Thorwart
Journal:  J Chem Phys       Date:  2014-12-21       Impact factor: 3.488

Review 3.  VCD studies on chiral characters of metal complex oligomers.

Authors:  Hisako Sato; Akihiko Yamagishi
Journal:  Int J Mol Sci       Date:  2013-01-07       Impact factor: 5.923

  3 in total

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