Literature DB >> 17131430

Protein dynamics tightly connected to the dynamics of surrounding and internal water molecules.

Volkhard Helms1.   

Abstract

Proteins are key components of biological cells. For example, enzymes catalyze biochemical reactions, membrane transporters are responsible for uptake and release of critical and superfluous components from the cell environment, and structural proteins are responsible for the stability of the cell wall and cytoskeleton. Many of the diverse protein functions involve dynamic transitions ranging from small local atomic displacements up to large allosteric conformational changes. In any conformation, proteins are in contact with the universal solvent medium of cells, water. Water not only surrounds proteins but is often an integral part of proteins and also is involved in key mechanistic steps. This Minireview discusses recent experimental and theoretical results on the role of water for protein dynamics and function.

Entities:  

Mesh:

Substances:

Year:  2007        PMID: 17131430     DOI: 10.1002/cphc.200600298

Source DB:  PubMed          Journal:  Chemphyschem        ISSN: 1439-4235            Impact factor:   3.102


  18 in total

Review 1.  Dynamics and mechanisms of DNA repair by photolyase.

Authors:  Zheyun Liu; Lijuan Wang; Dongping Zhong
Journal:  Phys Chem Chem Phys       Date:  2015-05-14       Impact factor: 3.676

2.  Influence of water clustering on the dynamics of hydration water at the surface of a lysozyme.

Authors:  Alla Oleinikova; Nikolai Smolin; Ivan Brovchenko
Journal:  Biophys J       Date:  2007-07-13       Impact factor: 4.033

3.  Conserved water molecules stabilize the Omega-loop in class A beta-lactamases.

Authors:  Fabian Bös; Jürgen Pleiss
Journal:  Antimicrob Agents Chemother       Date:  2008-01-14       Impact factor: 5.191

Review 4.  Coping with our cold planet.

Authors:  Debora Frigi Rodrigues; James M Tiedje
Journal:  Appl Environ Microbiol       Date:  2008-01-18       Impact factor: 4.792

5.  A unified model of protein dynamics.

Authors:  Hans Frauenfelder; Guo Chen; Joel Berendzen; Paul W Fenimore; Helén Jansson; Benjamin H McMahon; Izabela R Stroe; Jan Swenson; Robert D Young
Journal:  Proc Natl Acad Sci U S A       Date:  2009-02-27       Impact factor: 11.205

6.  Optical signatures of molecular dissymmetry: combining theory with experiments to address stereochemical puzzles.

Authors:  Parag Mukhopadhyay; Peter Wipf; David N Beratan
Journal:  Acc Chem Res       Date:  2009-06-16       Impact factor: 22.384

7.  Multiple molecular dynamics simulations of TEM beta-lactamase: dynamics and water binding of the omega-loop.

Authors:  Fabian Bös; Jürgen Pleiss
Journal:  Biophys J       Date:  2009-11-04       Impact factor: 4.033

8.  Ultrafast solvation dynamics at binding and active sites of photolyases.

Authors:  Chih-Wei Chang; Lijun Guo; Ya-Ting Kao; Jiang Li; Chuang Tan; Tanping Li; Chaitanya Saxena; Zheyun Liu; Lijuan Wang; Aziz Sancar; Dongping Zhong
Journal:  Proc Natl Acad Sci U S A       Date:  2010-01-26       Impact factor: 11.205

9.  Excited-state structural dynamics of a dual-emission calmodulin-green fluorescent protein sensor for calcium ion imaging.

Authors:  Breland G Oscar; Weimin Liu; Yongxin Zhao; Longteng Tang; Yanli Wang; Robert E Campbell; Chong Fang
Journal:  Proc Natl Acad Sci U S A       Date:  2014-07-01       Impact factor: 11.205

10.  Dominant Alcohol-Protein Interaction via Hydration-Enabled Enthalpy-Driven Binding Mechanism.

Authors:  Yuan Chong; Alfred Kleinhammes; Pei Tang; Yan Xu; Yue Wu
Journal:  J Phys Chem B       Date:  2015-04-17       Impact factor: 2.991

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.