Literature DB >> 19366671

Kinetic laws, phase-phase expansions, renormalization group, and INR calibration.

Marcel O Vlad1, Alexandru D Corlan, Federico Morán, Rainer Spang, Peter Oefner, John Ross.   

Abstract

We introduce systematic approaches to chemical kinetics based on the use of phase-phase (log-log) representations of the rate equations. For slow processes, we obtain a corrected form of the mass-action law, where the concentrations are replaced by kinetic activities. For fast reactions, delay expressions are derived. The phase-phase expansion is, in general, applicable to kinetic and transport processes. A mechanism is introduced for the occurrence of a generalized mass-action law as a result of self-similar recycling. We show that our self-similar recycling model applied to prothrombin assays reproduces the empirical equations for the International Normalized Ratio calibration (INR), as well as the Watala, Golanski, and Kardas relation (WGK) for the dependence of the INR on the concentrations of coagulation factors. Conversely, the experimental calibration equation for the INR, combined with the experimental WGK relation, without the use of theoretical models, leads to a generalized mass-action type kinetic law.

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Year:  2009        PMID: 19366671      PMCID: PMC2672524          DOI: 10.1073/pnas.0809855106

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  15 in total

1.  Bayesian analysis of systems with random chemical composition: renormalization-group approach to Dirichlet distributions and the statistical theory of dilution.

Authors:  Marcel Ovidiu Vlad; Masa Tsuchiya; Peter Oefner; John Ross
Journal:  Phys Rev E Stat Nonlin Soft Matter Phys       Date:  2001-12-20

2.  Advantages of external periodic events to the evolution of biochemical oscillatory reactions.

Authors:  Masa Tsuchiya; John Ross
Journal:  Proc Natl Acad Sci U S A       Date:  2003-07-31       Impact factor: 11.205

3.  A PK-PD model for predicting the impact of age, CYP2C9, and VKORC1 genotype on individualization of warfarin therapy.

Authors:  A-K Hamberg; M-L Dahl; M Barban; M G Scordo; M Wadelius; V Pengo; R Padrini; E N Jonsson
Journal:  Clin Pharmacol Ther       Date:  2007-02-14       Impact factor: 6.875

4.  Incremental parameter evaluation from incomplete data with application to the population pharmacology of anticoagulants.

Authors:  Marcel O Vlad; Alexandru Dan Corlan; Federico Morán; Peter Oefner; John Ross
Journal:  Proc Natl Acad Sci U S A       Date:  2008-03-19       Impact factor: 11.205

5.  Development of fractal kinetic theory for enzyme-catalysed reactions and implications for the design of biochemical pathways.

Authors:  M A Savageau
Journal:  Biosystems       Date:  1998 Jun-Jul       Impact factor: 1.973

6.  Genetic-algorithm selection of a regulatory structure that directs flux in a simple metabolic model.

Authors:  A Gilman; J Ross
Journal:  Biophys J       Date:  1995-10       Impact factor: 4.033

7.  A model for the stoichiometric regulation of blood coagulation.

Authors:  Matthew F Hockin; Kenneth C Jones; Stephen J Everse; Kenneth G Mann
Journal:  J Biol Chem       Date:  2002-03-13       Impact factor: 5.157

8.  Elucidation of gene interaction networks through time-lagged correlation analysis of transcriptional data.

Authors:  William A Schmitt; R Michael Raab; Gregory Stephanopoulos
Journal:  Genome Res       Date:  2004-08       Impact factor: 9.043

9.  Computationally derived points of fragility of a human cascade are consistent with current therapeutic strategies.

Authors:  Deyan Luan; Michael Zai; Jeffrey D Varner
Journal:  PLoS Comput Biol       Date:  2007-07       Impact factor: 4.475

10.  Multivariate relationships between international normalized ratio and vitamin K-dependent coagulation-derived parameters in normal healthy donors and oral anticoagulant therapy patients.

Authors:  Cezary Watala; Jacek Golanski; Przemyslaw Kardas
Journal:  Thromb J       Date:  2003-11-30
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  3 in total

1.  Complex systems: from chemistry to systems biology.

Authors:  John Ross; Adam P Arkin
Journal:  Proc Natl Acad Sci U S A       Date:  2009-04-20       Impact factor: 11.205

2.  Presence or Absence of Ras Dimerization Shows Distinct Kinetic Signature in Ras-Raf Interaction.

Authors:  Sumantra Sarkar; Angel E García
Journal:  Biophys J       Date:  2020-03-14       Impact factor: 4.033

3.  Canalization effect in the coagulation cascade and the interindividual variability of oral anticoagulant response. A simulation study.

Authors:  Alexandru D Corlan; John Ross
Journal:  Theor Biol Med Model       Date:  2011-10-12       Impact factor: 2.432

  3 in total

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